paxbp1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	paxbp1
Entrez Gene ID	563266
Full Name	zgc:158234
General protein information	Preferred Names zgc:158234 Names PAX3- and PAX7-binding protein 1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001080183.2	NP_001073652.2	PAX3- and PAX7-binding protein 1

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	GCFC1	XP_001164401.1
Bos taurus (cattle)	GCFC1	NP_001069157.3
Mus musculus (house mouse)	Paxbp1	NP_080386.3
Rattus norvegicus (Norway rat)	Paxbp1	XP_001057305.1
Danio rerio (zebrafish)	zgc:158234	NP_001073652.2
Caenorhabditis elegans (roundworm)	F43G9.12	NP_001250839.1
	GCFC1	XP_001094648.1
Canis lupus familiaris (dog)	PAXBP1	XP_852159.2
Gallus gallus (chicken)	GCFC1	XP_004938445.1
Xenopus tropicalis (tropical clawed frog)	paxbp1	NP_001120364.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP002035	XP_321016.5
Homo sapiens (human)	PAXBP1	NP_057715.2
Drosophila melanogaster (fruit fly)	CG1965	NP_649689.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

olig1 Expression identifies developing oligodendrocytes in zebrafish and requires hedgehog and notch signaling.
Schebesta M, Serluca FC
Developmental dynamics : an official publication of the American Association of Anatomists238(4)887-98(2009 Apr)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following paxbp1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the paxbp1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa31116	NM_001080183.2 Latest version!	Danio rerio PAX3 and PAX7 binding protein 1 (paxbp1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$510.30 $729.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

paxbp1 ( NM_001080183.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001073652.2 Danio rerio PAX3 and PAX7 binding protein 1 (paxbp1), mRNA.

Price & Availability↑

CloneID	ODa31116
Clone ID Related Accession (Same CDS sequence)	NM_001080183.2
Accession Version	NM_001080183.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2685bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-05-12
Organism	Danio rerio(zebrafish)
Product	PAX3- and PAX7-binding protein 1
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL929315.8. On Aug 5, 2010 this sequence version replaced NM_001080183.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGTTTAAAA AAGCTAAGAG ATGCAATTTC AGGCGGCGGA ATGACTCGGA GGATGAGGAA 
AAAGAGGAGC AGCAACAGTC CGGTGGGCCC GGGGCTGAAG ACTCCGCGAG CCCGAGTGAG 
TCCGGCAGCG GCCCCGCTCC CGGAGCAAAC GTGCTGAACA ACCACGGAAA CGGATTTCAG 
CCAGGTGCTG TCAAGGCCGT TAAAGAGAAG AAAAAGAGGA AGGAGATCCG AGAGGAGCCG 
AAAGCAAGTC TGCTGAGCTT CCAGGATGAT GAAGATGAAG CAGAAGTTTT CCGTGTGAAG 
AAGTCCAACC ACAGCAAGAA GATCGTCAAG CAGCTCAAGA AAGAATACAA GGAGGATTTG 
GAGAAGACTG TACCGGAGCA AAGCACTCGT ATTGGTGGTC AGAATCTGAC CATTAAAGAG 
GAGCCCTTAG AGGGCAGCAG AGCCAGCAGT GAACAAGGAG AAGAAGAAAT GGAGGTGGAC 
AGCAATGAGG ATCAGGAGGA GGAGGGTGAT CAGAAGTCTG CAGGTGGAGC GTTTAAAGAA 
AATCTGTCAG CCCTCAGCTT ACTCAGACCA GGTGAGATTC CTGATGCAGC CTTCATCCAT 
GCTGCACGTA AACGTCGTCA GATGGCTCGA GAGCTCGGCG GAGACACTCC ACTGGTCGAG 
AATGATCCGA CAAACAAACG TCTCGTTCAC GAAGATGAAA ACGGAGACAT GGATGATGAT 
GAAGATGAAA AGAGAATCGT CTTCAGTGGA GTCAACACGA AGAGTCAGAG GCAGAAAATA 
GCAGAGGAGA TTGGTATTGA AGGCAGTGAT GATGAAGCTC TAGATAATGG ACAGGATGAG 
GAAGTGAGCC GTTGGGAGCA GGAGCAGATC AGGAAGGGCA TTAGCATCCC ACAGGTCCAA 
ACCCAGCCTG AAGATACAAG CATGTATTAC CAGGGCAGTT ATGATGCTCA GCCGTATGGT 
GCATCCTACG CCATGCCGTT TAACTACGCC ACTGCCGTAG CAGGAGTTGA CAATAGCAAA 
CCGCTGAAAG CAGAGCCGTC AGTTCCCTAT CCCATTCCCT CTTGTGAACT GACCCCTATA 
ACCACAGATC TGGTAAAGAA ACGCCTCCAA GACAGGCTGA GCTTCATGCG TCAGGGGCAC 
AATACCAATG CCCGGCGCTA TCAGCAGATC CAGGAGGATC TGGAGGCCTC CAAAAAGGCC 
ATCCGGGTCC TGGAGGGCTC CTCTGTAGAG GCCGCAGACA AATATAGATT CTTGCAAGAA 
ATGCGAGGGT ATGTTGGAGA CTTGCTTGAG TGTTTGAGTG AAAAGGTGCC TGTCATTCTG 
GAGCTAGAGG CCGCCATGCA CCAGTTACTT CGACAGCGGG CGTCCCGTCT CGTCCAGAGA 
AGACAGGATG ATATTAAAGA TGAATCGTCG GAGTTTTCCA GCCTTTCAAG TAAGGCTGTT 
ATGGCCCCTA ACCTGGACTC ATTTGGCCGA GATCGTACTG CCTATCTGGA GCTCGCAAAG 
CAAAGGAGGA TAGCTGAAAG AGAAGCCAGA CGAACTCGTC GCAGACAAGC TCGTGAGCAG 
AACGACAAGA GAGCAGAGCA TAAGGAAGGA CTGTCTAGTG ACGATGAAGA GACGTCCACT 
GACATTACCA GCTTCGACTC AGAGAGAGAG CGCATCTTAA AAGAGTCAAA GAAGGTGTTT 
GAGGATGTGG TGGAGGATTT CCATTCTCTG GACAATATCA AATCTCACTT TGAGACCTGG 
AGAAAGCTGT ATTACAGCTG CTACAGAGAC GCCTACATTG GATTGTGTCT GCCCAAACTC 
TTCAACCCTC TTATTCGGCT GCAGCTTATC TCGTGGTCCC CACTGGAGGT GGAGTGCTCC 
AACTTTGAGT ACATGCTGTG GTTTGAGTCT CTGCTCTTCT ATGGCTGTGG GGAGCAAAGT 
GCTCTAAAGA AAGAGGAAGA CGTGGATAAC AACCTGCTTC CTGCTATTGT AGAAAGAGTG 
CTGCTTCCTA AACTAGCAGT GCTAACGGAT CAGATCTGGG ATCCACTGTC CAACAGCCAG 
ACATACAGAC TGGTGGCATT CATGAAGAGG CTAGTGAAAG ACTATCCCAC TGTCCTGCAC 
GGCGAAAACC GCAACACACA AGAGCTGCTA AGGACCGTGA TCATGCGAAT TCGACGGACT 
CTTGATGATG ACATTTTCCT GCCTCTGTTT CCAAAAAACG TTATGGAGAA CAAAAACTCT 
GGTGCTTACC TTTTCTCCCA GAGGCAGTTT TGGTCTTGTG TGAAGTTTCT TGGGAATATC 
TTAATGTGGG ATGGGATCCT GTCTCTGTCT GTGCTGAAAG ATCTGGCCAT TGACAGCACA 
CTGAACCGCT ACATCCTCTC AGCCCTGCAG ACCACTGATG CCAGCGAGGA GCATGTGGAG 
AAATGCCGCC GGGTGGTGGA GTGTTTCCCT GTTCAGTGGT TCAGCAGTCT GAAAGGACAG 
CAGACGCTCC CTCCACTGGA GAACTTCTGC AGATTCTTGA AGCACTTGTC CAGCAGCCTG 
TACCGCAGCT GTGTGGCAGG ATCAGATGTG GAGAAGAGGA ATGTCAGGGA ACACATAAAG 
GAGGTGATTC GGCTTCTGGG ACGCCTCAAC GCTTTAGACC ATGTGATCAC AGTCGCGTCT 
GAACATGGCA TCAAGGATAT AAAGACTCTT CTTGAGAAAA AATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001073652.2
CDS	121..2805
Translation	MFKKAKRCNFRRRNDSEDEEKEEQQQSGGPGAEDSASPSESGSGPAPGANVLNNHGNGFQPGAVKAVKEKKKRKEIREEPKASLLSFQDDEDEAEVFRVKKSNHSKKIVKQLKKEYKEDLEKTVPEQSTRIGGQNLTIKEEPLEGSRASSEQGEEEMEVDSNEDQEEEGDQKSAGGAFKENLSALSLLRPGEIPDAAFIHAARKRRQMARELGGDTPLVENDPTNKRLVHEDENGDMDDDEDEKRIVFSGVNTKSQRQKIAEEIGIEGSDDEALDNGQDEEVSRWEQEQIRKGISIPQVQTQPEDTSMYYQGSYDAQPYGASYAMPFNYATAVAGVDNSKPLKAEPSVPYPIPSCELTPITTDLVKKRLQDRLSFMRQGHNTNARRYQQIQEDLEASKKAIRVLEGSSVEAADKYRFLQEMRGYVGDLLECLSEKVPVILELEAAMHQLLRQRASRLVQRRQDDIKDESSEFSSLSSKAVMAPNLDSFGRDRTAYLELAKQRRIAEREARRTRRRQAREQNDKRAEHKEGLSSDDEETSTDITSFDSERERILKESKKVFEDVVEDFHSLDNIKSHFETWRKLYYSCYRDAYIGLCLPKLFNPLIRLQLISWSPLEVECSNFEYMLWFESLLFYGCGEQSALKKEEDVDNNLLPAIVERVLLPKLAVLTDQIWDPLSNSQTYRLVAFMKRLVKDYPTVLHGENRNTQELLRTVIMRIRRTLDDDIFLPLFPKNVMENKNSGAYLFSQRQFWSCVKFLGNILMWDGILSLSVLKDLAIDSTLNRYILSALQTTDASEEHVEKCRRVVECFPVQWFSSLKGQQTLPPLENFCRFLKHLSSSLYRSCVAGSDVEKRNVREHIKEVIRLLGRLNALDHVITVASEHGIKDIKTLLEKK

Target ORF information:

RefSeq Version	NM_001080183.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio PAX3 and PAX7 binding protein 1 (paxbp1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001080183.2

ORF Insert Sequence:

ATGTTTAAAA AAGCTAAGAG ATGCAATTTC AGGCGGCGGA ATGACTCGGA GGATGAGGAA 
AAAGAGGAGC AGCAACAGTC CGGTGGGCCC GGGGCTGAAG ACTCCGCGAG CCCGAGTGAG 
TCCGGCAGCG GCCCCGCTCC CGGAGCAAAC GTGCTGAACA ACCACGGAAA CGGATTTCAG 
CCAGGTGCTG TCAAGGCCGT TAAAGAGAAG AAAAAGAGGA AGGAGATCCG AGAGGAGCCG 
AAAGCAAGTC TGCTGAGCTT CCAGGATGAT GAAGATGAAG CAGAAGTTTT CCGTGTGAAG 
AAGTCCAACC ACAGCAAGAA GATCGTCAAG CAGCTCAAGA AAGAATACAA GGAGGATTTG 
GAGAAGACTG TACCGGAGCA AAGCACTCGT ATTGGTGGTC AGAATCTGAC CATTAAAGAG 
GAGCCCTTAG AGGGCAGCAG AGCCAGCAGT GAACAAGGAG AAGAAGAAAT GGAGGTGGAC 
AGCAATGAGG ATCAGGAGGA GGAGGGTGAT CAGAAGTCTG CAGGTGGAGC GTTTAAAGAA 
AATCTGTCAG CCCTCAGCTT ACTCAGACCA GGTGAGATTC CTGATGCAGC CTTCATCCAT 
GCTGCACGTA AACGTCGTCA GATGGCTCGA GAGCTCGGCG GAGACACTCC ACTGGTCGAG 
AATGATCCGA CAAACAAACG TCTCGTTCAC GAAGATGAAA ACGGAGACAT GGATGATGAT 
GAAGATGAAA AGAGAATCGT CTTCAGTGGA GTCAACACGA AGAGTCAGAG GCAGAAAATA 
GCAGAGGAGA TTGGTATTGA AGGCAGTGAT GATGAAGCTC TAGATAATGG ACAGGATGAG 
GAAGTGAGCC GTTGGGAGCA GGAGCAGATC AGGAAGGGCA TTAGCATCCC ACAGGTCCAA 
ACCCAGCCTG AAGATACAAG CATGTATTAC CAGGGCAGTT ATGATGCTCA GCCGTATGGT 
GCATCCTACG CCATGCCGTT TAACTACGCC ACTGCCGTAG CAGGAGTTGA CAATAGCAAA 
CCGCTGAAAG CAGAGCCGTC AGTTCCCTAT CCCATTCCCT CTTGTGAACT GACCCCTATA 
ACCACAGATC TGGTAAAGAA ACGCCTCCAA GACAGGCTGA GCTTCATGCG TCAGGGGCAC 
AATACCAATG CCCGGCGCTA TCAGCAGATC CAGGAGGATC TGGAGGCCTC CAAAAAGGCC 
ATCCGGGTCC TGGAGGGCTC CTCTGTAGAG GCCGCAGACA AATATAGATT CTTGCAAGAA 
ATGCGAGGGT ATGTTGGAGA CTTGCTTGAG TGTTTGAGTG AAAAGGTGCC TGTCATTCTG 
GAGCTAGAGG CCGCCATGCA CCAGTTACTT CGACAGCGGG CGTCCCGTCT CGTCCAGAGA 
AGACAGGATG ATATTAAAGA TGAATCGTCG GAGTTTTCCA GCCTTTCAAG TAAGGCTGTT 
ATGGCCCCTA ACCTGGACTC ATTTGGCCGA GATCGTACTG CCTATCTGGA GCTCGCAAAG 
CAAAGGAGGA TAGCTGAAAG AGAAGCCAGA CGAACTCGTC GCAGACAAGC TCGTGAGCAG 
AACGACAAGA GAGCAGAGCA TAAGGAAGGA CTGTCTAGTG ACGATGAAGA GACGTCCACT 
GACATTACCA GCTTCGACTC AGAGAGAGAG CGCATCTTAA AAGAGTCAAA GAAGGTGTTT 
GAGGATGTGG TGGAGGATTT CCATTCTCTG GACAATATCA AATCTCACTT TGAGACCTGG 
AGAAAGCTGT ATTACAGCTG CTACAGAGAC GCCTACATTG GATTGTGTCT GCCCAAACTC 
TTCAACCCTC TTATTCGGCT GCAGCTTATC TCGTGGTCCC CACTGGAGGT GGAGTGCTCC 
AACTTTGAGT ACATGCTGTG GTTTGAGTCT CTGCTCTTCT ATGGCTGTGG GGAGCAAAGT 
GCTCTAAAGA AAGAGGAAGA CGTGGATAAC AACCTGCTTC CTGCTATTGT AGAAAGAGTG 
CTGCTTCCTA AACTAGCAGT GCTAACGGAT CAGATCTGGG ATCCACTGTC CAACAGCCAG 
ACATACAGAC TGGTGGCATT CATGAAGAGG CTAGTGAAAG ACTATCCCAC TGTCCTGCAC 
GGCGAAAACC GCAACACACA AGAGCTGCTA AGGACCGTGA TCATGCGAAT TCGACGGACT 
CTTGATGATG ACATTTTCCT GCCTCTGTTT CCAAAAAACG TTATGGAGAA CAAAAACTCT 
GGTGCTTACC TTTTCTCCCA GAGGCAGTTT TGGTCTTGTG TGAAGTTTCT TGGGAATATC 
TTAATGTGGG ATGGGATCCT GTCTCTGTCT GTGCTGAAAG ATCTGGCCAT TGACAGCACA 
CTGAACCGCT ACATCCTCTC AGCCCTGCAG ACCACTGATG CCAGCGAGGA GCATGTGGAG 
AAATGCCGCC GGGTGGTGGA GTGTTTCCCT GTTCAGTGGT TCAGCAGTCT GAAAGGACAG 
CAGACGCTCC CTCCACTGGA GAACTTCTGC AGATTCTTGA AGCACTTGTC CAGCAGCCTG 
TACCGCAGCT GTGTGGCAGG ATCAGATGTG GAGAAGAGGA ATGTCAGGGA ACACATAAAG 
GAGGTGATTC GGCTTCTGGG ACGCCTCAAC GCTTTAGACC ATGTGATCAC AGTCGCGTCT 
GAACATGGCA TCAAGGATAT AAAGACTCTT CTTGAGAAAA AATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

olig1 Expression identifies developing oligodendrocytes in zebrafish and requires hedgehog and notch signaling.
Developmental dynamics : an official publication of the American Association of Anatomists238(4)887-98(2009 Apr)
Schebesta M,Serluca FC

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paxbp1 cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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