ccdc3a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	ccdc3a
Entrez Gene ID	560952
Full Name	coiled-coil domain containing 3a
Synonyms	ccdc3,si:ch211-220p15.9
General protein information	Preferred Names coiled-coil domain containing 3a Names coiled-coil domain-containing protein 3 coiled-coil domain containing 3 like
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001025510.1	NP_001020681.1	coiled-coil domain-containing protein 3 precursor

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	CCDC3	XP_001138551.1
Gallus gallus (chicken)	CCDC3	XP_003640381.1
Homo sapiens (human)	CCDC3	NP_113643.1
Danio rerio (zebrafish)	ccdc3	NP_001020681.1
Canis lupus familiaris (dog)	CCDC3	XP_849425.1
Rattus norvegicus (Norway rat)	Ccdc3	XP_574081.4
	CCDC3	XP_001085385.1
Bos taurus (cattle)	CCDC3	NP_001165846.1
Mus musculus (house mouse)	Ccdc3	NP_083080.1
Xenopus tropicalis (tropical clawed frog)	ccdc3	NP_001017103.2

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Identification of an Alu-repeat-mediated deletion of OPTN upstream region in a patient with a complex ocular phenotype.
Schilter KF, Reis LM, Sorokina EA, Semina EV
Molecular genetics & genomic medicine3(6)490-9(2015 Nov)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following ccdc3a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ccdc3a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa01619	NM_001025510.1 Latest version!	Danio rerio coiled-coil domain containing 3a (ccdc3a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
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5 or more Clone	50% OFF
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

ccdc3a ( NM_001025510.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001020681.1 Danio rerio coiled-coil domain containing 3a (ccdc3a), mRNA.

Price & Availability↑

CloneID	ODa01619
Clone ID Related Accession (Same CDS sequence)	NM_001025510.1
Accession Version	NM_001025510.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 831bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-08-05
Organism	Danio rerio(zebrafish)
Product	coiled-coil domain-containing protein 3 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BX321885.11. On Jul 16, 2005 this sequence version replaced XM_684349.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGCACCTTG CGCTTCTGCT GACGCTGGGT TTCGGGTTCG CGTTTGCATG CCAGCTTCCG 
AGCGAGTGGC GACCCCTGAG CGAGGGTTGT CGGGCTGAAC TCGCCGAGAT TATCGTGTAC 
GCCAAGGTGC TGGCCATCCA CGATGAGCCG TACGCGTCCA GTCTATATAA CTATCTGCCG 
TACCAGAAGC ACGAGCGCGC CGAAGACGCG CTGCTGTACG CGGCGGAGGT GGAGTTGCTA 
TGCGACCAGG CGTGGGGCAG CATGCTGGAG GTGCCCGCGG GTTCACGCCT CAACCTCACG 
GGACTCGGAT ACTTCAGCTG TCAGTCACAC ACGGTGATGG AAAACAACTC CTACATATTC 
TTTCTCAGGA TGGACGAAAA CTACAACATC CTCCCGCATG GAGTTAACTT CCAGGATGCC 
ATATTCCCCG ACACGCTGGA GAACAGACGC CTGTTTTCCA GCCTCTTCCA GTTCTCAAAC 
TGCTCTGGTG GACAGACAAT GCACAACTTT AATAGCGATT GGGAGAGCCA GGAAGACAGC 
AGGCTGCTGT GTTCCTCCAT GCAGAAGGTT TTGTTTGAGG AGGAGGAGCG GGTCGGACAG 
CTTGAGGAGC GTGTGGCCGA GCTGGAGAGG AAGAACCAAC AATTAAAAGA ACGAGTGGGA 
AAACTGAGGC ATTCTCTGAG GAAAACCCGG AAAGGGCTGC GCCGTGCCGA GCGGGAACGC 
CAGGAGTTTC ATGAGCGTCT TAAGACGGCG GAGAGACATG CAGGACATCA CCTCAATGCC 
ATTCCCCCCC AACACAGCCC TTCACAACAC AGATACACAC ATGGACTGTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001020681.1
CDS	2..832
Translation	MHLALLLTLGFGFAFACQLPSEWRPLSEGCRAELAEIIVYAKVLAIHDEPYASSLYNYLPYQKHERAEDALLYAAEVELLCDQAWGSMLEVPAGSRLNLTGLGYFSCQSHTVMENNSYIFFLRMDENYNILPHGVNFQDAIFPDTLENRRLFSSLFQFSNCSGGQTMHNFNSDWESQEDSRLLCSSMQKVLFEEEERVGQLEERVAELERKNQQLKERVGKLRHSLRKTRKGLRRAERERQEFHERLKTAERHAGHHLNAIPPQHSPSQHRYTHGL

Target ORF information:

RefSeq Version	NM_001025510.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio coiled-coil domain containing 3a (ccdc3a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001025510.1

ORF Insert Sequence:

ATGCACCTTG CGCTTCTGCT GACGCTGGGT TTCGGGTTCG CGTTTGCATG CCAGCTTCCG 
AGCGAGTGGC GACCCCTGAG CGAGGGTTGT CGGGCTGAAC TCGCCGAGAT TATCGTGTAC 
GCCAAGGTGC TGGCCATCCA CGATGAGCCG TACGCGTCCA GTCTATATAA CTATCTGCCG 
TACCAGAAGC ACGAGCGCGC CGAAGACGCG CTGCTGTACG CGGCGGAGGT GGAGTTGCTA 
TGCGACCAGG CGTGGGGCAG CATGCTGGAG GTGCCCGCGG GTTCACGCCT CAACCTCACG 
GGACTCGGAT ACTTCAGCTG TCAGTCACAC ACGGTGATGG AAAACAACTC CTACATATTC 
TTTCTCAGGA TGGACGAAAA CTACAACATC CTCCCGCATG GAGTTAACTT CCAGGATGCC 
ATATTCCCCG ACACGCTGGA GAACAGACGC CTGTTTTCCA GCCTCTTCCA GTTCTCAAAC 
TGCTCTGGTG GACAGACAAT GCACAACTTT AATAGCGATT GGGAGAGCCA GGAAGACAGC 
AGGCTGCTGT GTTCCTCCAT GCAGAAGGTT TTGTTTGAGG AGGAGGAGCG GGTCGGACAG 
CTTGAGGAGC GTGTGGCCGA GCTGGAGAGG AAGAACCAAC AATTAAAAGA ACGAGTGGGA 
AAACTGAGGC ATTCTCTGAG GAAAACCCGG AAAGGGCTGC GCCGTGCCGA GCGGGAACGC 
CAGGAGTTTC ATGAGCGTCT TAAGACGGCG GAGAGACATG CAGGACATCA CCTCAATGCC 
ATTCCCCCCC AACACAGCCC TTCACAACAC AGATACACAC ATGGACTGTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Identification of an Alu-repeat-mediated deletion of OPTN upstream region in a patient with a complex ocular phenotype.
Molecular genetics & genomic medicine3(6)490-9(2015 Nov)
Schilter KF,Reis LM,Sorokina EA,Semina EV