pgm5 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	pgm5
Entrez Gene ID	560297
Full Name	phosphoglucomutase 5
Synonyms	si:dkey-91m11.4
General protein information	Preferred Names phosphoglucomutase 5 Names phosphoglucomutase-like protein 5 aciculin
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001126396.1	NP_001119868.1	phosphoglucomutase-like protein 5

Pathways from BioSystems

Homologies

Canis lupus familiaris (dog)	PGM5	XP_533534.2
Mus musculus (house mouse)	Pgm5	NP_778178.3
Rattus norvegicus (Norway rat)	Pgm5	NP_001178882.1
Arabidopsis thaliana (thale cress)	AT1G70730	NP_001154465.1
Homo sapiens (human)	PGM5	NP_068800.2
Pan troglodytes (chimpanzee)	LOC472942	XP_003312190.1
Bos taurus (cattle)	PGM5	NP_001095805.1
Gallus gallus (chicken)	PGM5	XP_424802.3
Danio rerio (zebrafish)	pgm5	NP_001119868.1
Oryza sativa (rice)	Os03g0712700	NP_001051066.1
	PGM5	XP_001092895.1
Arabidopsis thaliana (thale cress)	AT1G23190	NP_173732.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

The evolutionary fate of alternatively spliced homologous exons after gene duplication.
Abascal F, Tress ML, Valencia A
Genome biology and evolution7(6)1392-403(2015 Apr)

Aciculin interacts with filamin C and Xin and is essential for myofibril assembly, remodeling and maintenance.
Molt S, B?hrdel JB, Yakovlev S, Schein P, Orfanos Z, Kirfel G, Winter L, Wiche G, van der Ven PF, Rottbauer W, Just S, Belkin AM, F?rst DO
Journal of cell science127(Pt 16)3578-92(2014 Aug)

Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes.
Ca?estro C, Catchen JM, Rodr?guez-Mar? A, Yokoi H, Postlethwait JH
PLoS genetics5(5)e1000496(2009 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following pgm5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the pgm5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa33372	NM_001126396.1 Latest version!	Danio rerio phosphoglucomutase 5 (pgm5), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$342.30 $489.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

pgm5 ( NM_001126396.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001119868.1 Danio rerio phosphoglucomutase 5 (pgm5), mRNA.

Price & Availability↑

CloneID	ODa33372
Clone ID Related Accession (Same CDS sequence)	NM_001126396.1
Accession Version	NM_001126396.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1704bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-08-05
Organism	Danio rerio(zebrafish)
Product	phosphoglucomutase-like protein 5
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AL845168.5. On Jul 31, 2008 this sequence version replaced XM_683694.2. ##Evidence-Data-START## CDS exon combination :: GDQH01008565.1, GFIL01030096.1 [ECO:0000331] RNAseq introns :: single sample supports all introns SAMN01765705, SAMN06350654 [ECO:0000348] ##Evidence-Data-END##

ATGGAGACAA ACCCTATACC CATTTTGACC ATCCAAACTA CACCCTTCGA TGACCAGAGA 
CCAGGTACAA ACGGGCTGCG AAAGAAGACT GCAGTGTTCG AGAGCAATAA CAACTATCTT 
CAAAACTACA TCCAGAGTGT GCTGTCCTCC ATCGACCTGA GGGACCGACA GGGATGCACT 
ATGGTGGTGG GCAGCGATGG AAGATACTTT AGCCGGGCAG CGACCGAAGT CATCGTTCAG 
ATGGCAGCTG CCAACGGGAT AGGACGTCTG GTGATTGGAC ACAACGGGAT CCTGTCCACC 
CCAGCAGTGT CCTGCATCAT CAGGAAGATT AAAGCTATTG GTGGTATCAT CCTCACTGCA 
AGCCACAGTC CGGGAGGACC AGGAGGAGAT TTTGGGATCA AATTTAATGT CGCGAATGGA 
GGACCATCTC CAGACACAGT GATAGAGAGA ATCCACCAGG TGAGCCGCAC TTTAGAGGAA 
TATGCTATTT GTCCTGACCT GCACATCGAC CTTTCCCGAC TCGGCCGTCA GGACTTTGAT 
TTAGAGAACA AGTTTAAACC CTTCAGAGTT GAGATTGTGG ATTCAGTGGA GATCTATTTC 
AACCTGCTGA GGGGCATTTT TGACTTCAGT GGCATCAAGA GCTTGCTGAC AGGCCCAAAC 
CAGCTGAAGA TTCGAATAGA TGCCATGAAT GGAGTAATGG GACCATATGT CAGAAGAATC 
CTATGTGATG AGCTCGGAGC TCCAGCTAAC TCTGCAGTGA ACTGTGTCCC TCTGGAGGAC 
TTTGGAGGCC AACACCCAAA CCCAAACCCT GCTTTCGCTG GACCTCTGGT GGACTCCATG 
AAGGGCGGAG AGTTCGGCTT TGGAGCTGCT TTTGATGCAG ATGGGGATCG TTACATGATC 
ATGGGTGAGA ATGGGTTTTT CGTGAGTCCG TCAGATTCGC TTGCAGTGAT GGCTGCAAAT 
CTCTCCTGCA TCCCTTACTT CAGTCAAAGA GGAATCCGAG GTTTTGCCCG CAGTATGCCA 
ACCAGCACAG CCATTGACAG GGTTGCTAAG GCTATGAAAG TGGCACTTTA TGAAACGCCC 
ACAGGCTGGA GATTTTTTGG CAACCTGCTG GATTCGGGGA GGTGTTCGTT CTGTGGAGAG 
GAGAGCTTCG GAACAGGTTC AGACCATATT CGAGATAAAG ATGGTCTGTG GTCAGTTCTG 
GTTTGGTTGT CCATCATGGC AGTGCGTAAG CAGGGAGTGG AAGAAATTGT GAGAGATCAC 
TGGGCCAAAT TGGGACGCAA TTACTTCTGC AGGTTTGATT ATGAAGGAGT GGACGGCAAG 
GCAGCGTTTT ACCTCATGAG AGATTTGGAG GCCGTTATCA CTGATAAAGC TTTCACCACT 
CAGAAGTTTT CAGTGGGCAA TACTGTCTAC AGTGTGGAGA AGGCCGATAA TTTTGAGTAC 
ATAGACCCAG TGGACGGCAG TGTGTCACGG AAACAGGGCC TAAGGATCAT CTTTACCGAT 
TCATCCCGAA TCATCTTTCG GCTCAGTGGT TCTGGGTCTG GAACAGGAGC AACCGTTCGC 
ATCTATGCTG AAAGCTACGA GAGAGACCCT GAAAGACACA ACAGAGAGAC TCAGGTTGTG 
CTGGGTCCTC TCATCGCCAT TGCTCTGAAA ATCTCCAACA TCCACGAACG AACTGGACGC 
AGAGGGCCTA ATATCATCAC CTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001119868.1
CDS	1..1704
Translation	METNPIPILTIQTTPFDDQRPGTNGLRKKTAVFESNNNYLQNYIQSVLSSIDLRDRQGCTMVVGSDGRYFSRAATEVIVQMAAANGIGRLVIGHNGILSTPAVSCIIRKIKAIGGIILTASHSPGGPGGDFGIKFNVANGGPSPDTVIERIHQVSRTLEEYAICPDLHIDLSRLGRQDFDLENKFKPFRVEIVDSVEIYFNLLRGIFDFSGIKSLLTGPNQLKIRIDAMNGVMGPYVRRILCDELGAPANSAVNCVPLEDFGGQHPNPNPAFAGPLVDSMKGGEFGFGAAFDADGDRYMIMGENGFFVSPSDSLAVMAANLSCIPYFSQRGIRGFARSMPTSTAIDRVAKAMKVALYETPTGWRFFGNLLDSGRCSFCGEESFGTGSDHIRDKDGLWSVLVWLSIMAVRKQGVEEIVRDHWAKLGRNYFCRFDYEGVDGKAAFYLMRDLEAVITDKAFTTQKFSVGNTVYSVEKADNFEYIDPVDGSVSRKQGLRIIFTDSSRIIFRLSGSGSGTGATVRIYAESYERDPERHNRETQVVLGPLIAIALKISNIHERTGRRGPNIIT

Target ORF information:

RefSeq Version	NM_001126396.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio phosphoglucomutase 5 (pgm5), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001126396.1

ORF Insert Sequence:

ATGGAGACAA ACCCTATACC CATTTTGACC ATCCAAACTA CACCCTTCGA TGACCAGAGA 
CCAGGTACAA ACGGGCTGCG AAAGAAGACT GCAGTGTTCG AGAGCAATAA CAACTATCTT 
CAAAACTACA TCCAGAGTGT GCTGTCCTCC ATCGACCTGA GGGACCGACA GGGATGCACT 
ATGGTGGTGG GCAGCGATGG AAGATACTTT AGCCGGGCAG CGACCGAAGT CATCGTTCAG 
ATGGCAGCTG CCAACGGGAT AGGACGTCTG GTGATTGGAC ACAACGGGAT CCTGTCCACC 
CCAGCAGTGT CCTGCATCAT CAGGAAGATT AAAGCTATTG GTGGTATCAT CCTCACTGCA 
AGCCACAGTC CGGGAGGACC AGGAGGAGAT TTTGGGATCA AATTTAATGT CGCGAATGGA 
GGACCATCTC CAGACACAGT GATAGAGAGA ATCCACCAGG TGAGCCGCAC TTTAGAGGAA 
TATGCTATTT GTCCTGACCT GCACATCGAC CTTTCCCGAC TCGGCCGTCA GGACTTTGAT 
TTAGAGAACA AGTTTAAACC CTTCAGAGTT GAGATTGTGG ATTCAGTGGA GATCTATTTC 
AACCTGCTGA GGGGCATTTT TGACTTCAGT GGCATCAAGA GCTTGCTGAC AGGCCCAAAC 
CAGCTGAAGA TTCGAATAGA TGCCATGAAT GGAGTAATGG GACCATATGT CAGAAGAATC 
CTATGTGATG AGCTCGGAGC TCCAGCTAAC TCTGCAGTGA ACTGTGTCCC TCTGGAGGAC 
TTTGGAGGCC AACACCCAAA CCCAAACCCT GCTTTCGCTG GACCTCTGGT GGACTCCATG 
AAGGGCGGAG AGTTCGGCTT TGGAGCTGCT TTTGATGCAG ATGGGGATCG TTACATGATC 
ATGGGTGAGA ATGGGTTTTT CGTGAGTCCG TCAGATTCGC TTGCAGTGAT GGCTGCAAAT 
CTCTCCTGCA TCCCTTACTT CAGTCAAAGA GGAATCCGAG GTTTTGCCCG CAGTATGCCA 
ACCAGCACAG CCATTGACAG GGTTGCTAAG GCTATGAAAG TGGCACTTTA TGAAACGCCC 
ACAGGCTGGA GATTTTTTGG CAACCTGCTG GATTCGGGGA GGTGTTCGTT CTGTGGAGAG 
GAGAGCTTCG GAACAGGTTC AGACCATATT CGAGATAAAG ATGGTCTGTG GTCAGTTCTG 
GTTTGGTTGT CCATCATGGC AGTGCGTAAG CAGGGAGTGG AAGAAATTGT GAGAGATCAC 
TGGGCCAAAT TGGGACGCAA TTACTTCTGC AGGTTTGATT ATGAAGGAGT GGACGGCAAG 
GCAGCGTTTT ACCTCATGAG AGATTTGGAG GCCGTTATCA CTGATAAAGC TTTCACCACT 
CAGAAGTTTT CAGTGGGCAA TACTGTCTAC AGTGTGGAGA AGGCCGATAA TTTTGAGTAC 
ATAGACCCAG TGGACGGCAG TGTGTCACGG AAACAGGGCC TAAGGATCAT CTTTACCGAT 
TCATCCCGAA TCATCTTTCG GCTCAGTGGT TCTGGGTCTG GAACAGGAGC AACCGTTCGC 
ATCTATGCTG AAAGCTACGA GAGAGACCCT GAAAGACACA ACAGAGAGAC TCAGGTTGTG 
CTGGGTCCTC TCATCGCCAT TGCTCTGAAA ATCTCCAACA TCCACGAACG AACTGGACGC 
AGAGGGCCTA ATATCATCAC CTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

The evolutionary fate of alternatively spliced homologous exons after gene duplication.
Genome biology and evolution7(6)1392-403(2015 Apr)
Abascal F,Tress ML,Valencia A

Aciculin interacts with filamin C and Xin and is essential for myofibril assembly, remodeling and maintenance.
Journal of cell science127(Pt 16)3578-92(2014 Aug)
Molt S,B?hrdel JB,Yakovlev S,Schein P,Orfanos Z,Kirfel G,Winter L,Wiche G,van der Ven PF,Rottbauer W,Just S,Belkin AM,F?rst DO

Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes.
PLoS genetics5(5)e1000496(2009 May)
Ca?estro C,Catchen JM,Rodr?guez-Mar? A,Yokoi H,Postlethwait JH