zgc:86609 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	zgc:86609
Entrez Gene ID	494496
Full Name	zgc:86609
General protein information	Preferred Names zgc:86609 Names transmembrane protein 111-like partial optokinetic response b-like protein b
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001009987.2	NP_001009987.2	transmembrane protein 111-like
XM_021478245.1	XP_021333920.1	transmembrane protein 111-like isoform X1

Pathways from BioSystems

Homologies

Anopheles gambiae (African malaria mosquito)	AgaP_AGAP007885	XP_317608.3
Drosophila melanogaster (fruit fly)	CG6750	NP_609444.1
Kluyveromyces lactis	KLLA0B14146g	XP_452161.1
Eremothecium gossypii	AGOS_AFR429C	NP_985976.1
Caenorhabditis elegans (roundworm)	Y62E10A.10	NP_502575.1
Saccharomyces cerevisiae (baker's yeast)	EMC3	NP_012715.3
Schizosaccharomyces pombe (fission yeast)	aim27	NP_595876.1
Neurospora crassa	NCU00966	XP_965159.1
Danio rerio (zebrafish)	zgc:86609	NP_001009987.2
Magnaporthe oryzae (rice blast fungus)	MGG_10831	XP_003713433.1

Gene Ontology
Bibliography

Related articles in PubMed

Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following zgc:86609 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the zgc:86609 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa34868	NM_001009987.2 Latest version!	Danio rerio zgc:86609 (zgc:86609), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
ODa143691	XM_021478245.1 Latest version!	Danio rerio zgc:86609 (zgc:86609), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$174.30 $249.00

ORF Online Only Promotion

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5 or more Clone	50% OFF
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*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

zgc:86609 ( NM_001009987.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001009987.2 Danio rerio zgc:86609 (zgc:86609), mRNA.

Price & Availability↑

CloneID	ODa34868
Clone ID Related Accession (Same CDS sequence)	NM_001009987.2
Accession Version	NM_001009987.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 762bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-01-26
Organism	Danio rerio(zebrafish)
Product	transmembrane protein 111-like
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH556545.1, EH577644.1 and CR847787.4. On Mar 4, 2011 this sequence version replaced NM_001009987.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC088380.1, GFIL01047606.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGGCAGGTC CAGAGCTGCT GCTAGACTCC AGTATTCGCC TTTGGGTTGT TTTGCCCATA 
GTCTTCATCA CATTCTTCGT CGGAGTTTTG CGGCATTACA TCACTAAACT CATCCATAAT 
GAGAAGAAAG TGGATCTGCA GCAGGTGTCT GACAGCCAGG TTTTGCTGCG CAGTCGCATA 
TTAAGAGAAA ACGGAAAGTA TCTTCCTAAA CAGTCATTTG CCATGAGAAA ACATTACTTC 
AACAACCCTG AGACTGGATT CTTCAAGAAG GTCAAAAGAA AGGTGACCCC CAAAAACCCC 
ATGACAGATC CCAGCATGCT GACCGACATG ATGAAAGGAA ATCTGACCAA CGTGCTGCCC 
ATGATTCTGA TTGGAGGATG GATCAACTGG GCCTTTTCTG GTTTCCTCAC AACTAAAGTT 
CCTTTTCCTC TGACGCTGAG ATTTAAGCCC ATGCTACAGA GAGGAATCGA GCTGGTCTCT 
CTGGATGCCT CATGGGTTAG TTCAGCTTCA TGGTATTTTC TTAATGTGTT CGGGCTCAGA 
AGCATGTACA CCCTCATCCT TGGACAAGAC AATGCTGCAG ATCAGTCCAG AATTATGCAG 
GATCAGATGA CGGGGGCTGC GATGGCGATG CCCCCTGATC CTAATAAAGC ATTTAAGAGC 
GAGTGGGAAG CCCTGGAGAT CGTGGAGCAT AAATGGGCCC TGGAGAACGT TGAGGAGGAA 
CTCATGTGTC AGGATCTGAA CTTCAGAGAA CTCTTTAACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001009987.2
CDS	173..934
Translation	MAGPELLLDSSIRLWVVLPIVFITFFVGVLRHYITKLIHNEKKVDLQQVSDSQVLLRSRILRENGKYLPKQSFAMRKHYFNNPETGFFKKVKRKVTPKNPMTDPSMLTDMMKGNLTNVLPMILIGGWINWAFSGFLTTKVPFPLTLRFKPMLQRGIELVSLDASWVSSASWYFLNVFGLRSMYTLILGQDNAADQSRIMQDQMTGAAMAMPPDPNKAFKSEWEALEIVEHKWALENVEEELMCQDLNFRELFN

Target ORF information:

RefSeq Version	NM_001009987.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio zgc:86609 (zgc:86609), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001009987.2

ORF Insert Sequence:

ATGGCAGGTC CAGAGCTGCT GCTAGACTCC AGTATTCGCC TTTGGGTTGT TTTGCCCATA 
GTCTTCATCA CATTCTTCGT CGGAGTTTTG CGGCATTACA TCACTAAACT CATCCATAAT 
GAGAAGAAAG TGGATCTGCA GCAGGTGTCT GACAGCCAGG TTTTGCTGCG CAGTCGCATA 
TTAAGAGAAA ACGGAAAGTA TCTTCCTAAA CAGTCATTTG CCATGAGAAA ACATTACTTC 
AACAACCCTG AGACTGGATT CTTCAAGAAG GTCAAAAGAA AGGTGACCCC CAAAAACCCC 
ATGACAGATC CCAGCATGCT GACCGACATG ATGAAAGGAA ATCTGACCAA CGTGCTGCCC 
ATGATTCTGA TTGGAGGATG GATCAACTGG GCCTTTTCTG GTTTCCTCAC AACTAAAGTT 
CCTTTTCCTC TGACGCTGAG ATTTAAGCCC ATGCTACAGA GAGGAATCGA GCTGGTCTCT 
CTGGATGCCT CATGGGTTAG TTCAGCTTCA TGGTATTTTC TTAATGTGTT CGGGCTCAGA 
AGCATGTACA CCCTCATCCT TGGACAAGAC AATGCTGCAG ATCAGTCCAG AATTATGCAG 
GATCAGATGA CGGGGGCTGC GATGGCGATG CCCCCTGATC CTAATAAAGC ATTTAAGAGC 
GAGTGGGAAG CCCTGGAGAT CGTGGAGCAT AAATGGGCCC TGGAGAACGT TGAGGAGGAA 
CTCATGTGTC AGGATCTGAA CTTCAGAGAA CTCTTTAACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

zgc:86609 ( XM_021478245.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_021333920.1 Danio rerio zgc:86609 (zgc:86609), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa143691
Clone ID Related Accession (Same CDS sequence)	XM_021478245.1
Accession Version	XM_021478245.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 645bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	transmembrane protein 111-like isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007119.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCAGGTC CAGAGCTGCT GCTAGACTCC AGTATTCGCC TTTGGGTTGT TTTGCCCATA 
GTCTTCATCA CATTCTTCGT CGGAGTTTTG CGGCATTACA TCACTAAACT CATCCATAAT 
GAGAAGAAAG TGGATCTGCA GCAGGTGTCT GACAGCCAGG TTTTGCTGCG CAGTCGCATA 
TTAAGAGAAA ACGGAAAGTA TCTTCCTAAA CAGTCATTTG CCATGAGAAA ACATTACTTC 
AACAACCCTG AGACTGGATT CTTCAAGAAG GTCAAAAGAA AGGTGACCCC CAAAAACCCC 
ATGACAGATC CCAGCATGCT GACCGACATG ATGAAAGGAA ATCTGACCAA CGTGCTGCCC 
ATGATTCTGA TTGGAGGATG GATCAACTGG GCCTTTTCTG GTTTCCTCAC AACTAAAGTT 
CCTTTTCCTC TGACGCTGAG ATTTAAGCCC ATGCTACAGA GAGGAATCGA GCTGGTCTCT 
CTGGATGCCT CATGGGTTAG TTCAGCTTCA TGGTATTTTC TTAATGTGTT CGGGCTCAGA 
AGCATGTACA CCCTCATCCT TGGACAAGAC AATGCCCTGG TGGCTTTTCT TCTTCCTGTT 
CATTTTCAGC TGCAGATCAG TCCAGAATTA TGCAGGATCA GATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_021333920.1
CDS	207..851
Translation	MAGPELLLDSSIRLWVVLPIVFITFFVGVLRHYITKLIHNEKKVDLQQVSDSQVLLRSRILRENGKYLPKQSFAMRKHYFNNPETGFFKKVKRKVTPKNPMTDPSMLTDMMKGNLTNVLPMILIGGWINWAFSGFLTTKVPFPLTLRFKPMLQRGIELVSLDASWVSSASWYFLNVFGLRSMYTLILGQDNALVAFLLPVHFQLQISPELCRIR

Target ORF information:

RefSeq Version	XM_021478245.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio zgc:86609 (zgc:86609), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_021478245.1

ORF Insert Sequence:

ATGGCAGGTC CAGAGCTGCT GCTAGACTCC AGTATTCGCC TTTGGGTTGT TTTGCCCATA 
GTCTTCATCA CATTCTTCGT CGGAGTTTTG CGGCATTACA TCACTAAACT CATCCATAAT 
GAGAAGAAAG TGGATCTGCA GCAGGTGTCT GACAGCCAGG TTTTGCTGCG CAGTCGCATA 
TTAAGAGAAA ACGGAAAGTA TCTTCCTAAA CAGTCATTTG CCATGAGAAA ACATTACTTC 
AACAACCCTG AGACTGGATT CTTCAAGAAG GTCAAAAGAA AGGTGACCCC CAAAAACCCC 
ATGACAGATC CCAGCATGCT GACCGACATG ATGAAAGGAA ATCTGACCAA CGTGCTGCCC 
ATGATTCTGA TTGGAGGATG GATCAACTGG GCCTTTTCTG GTTTCCTCAC AACTAAAGTT 
CCTTTTCCTC TGACGCTGAG ATTTAAGCCC ATGCTACAGA GAGGAATCGA GCTGGTCTCT 
CTGGATGCCT CATGGGTTAG TTCAGCTTCA TGGTATTTTC TTAATGTGTT CGGGCTCAGA 
AGCATGTACA CCCTCATCCT TGGACAAGAC AATGCCCTGG TGGCTTTTCT TCTTCCTGTT 
CATTTTCAGC TGCAGATCAG TCCAGAATTA TGCAGGATCA GATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 Mar)
Bay?s ?,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

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zgc:86609 cDNA ORF clone, Danio rerio(zebrafish)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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