gpatch1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	gpatch1
Entrez Gene ID	448925
Full Name	G patch domain containing 1
Synonyms	im:7135982,wu:fc11h11,wu:fj99h08
General protein information	Preferred Names G patch domain containing 1 Names G patch domain-containing protein 1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001204123.1	NP_001191052.1	G patch domain-containing protein 1

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	GPATCH1	XP_512571.3
	GPATCH1	XP_001107610.1
Bos taurus (cattle)	GPATCH1	NP_001069246.1
Mus musculus (house mouse)	Gpatch1	NP_080457.1
Homo sapiens (human)	GPATCH1	NP_060495.2
Rattus norvegicus (Norway rat)	Gpatch1	NP_001099716.1
Danio rerio (zebrafish)	gpatch1	NP_001191052.1
Canis lupus familiaris (dog)	GPATCH1	XP_853864.2
Gallus gallus (chicken)	GPATCH1	XP_004944287.1
Xenopus tropicalis (tropical clawed frog)	gpatch1	NP_001116191.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following gpatch1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the gpatch1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa31522	NM_001204123.1 Latest version!	Danio rerio G patch domain containing 1 (gpatch1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$510.30 $729.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

gpatch1 ( NM_001204123.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001191052.1 Danio rerio G patch domain containing 1 (gpatch1), mRNA.

Price & Availability↑

CloneID	ODa31522
Clone ID Related Accession (Same CDS sequence)	NM_001204123.1
Accession Version	NM_001204123.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2928bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	G patch domain-containing protein 1
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC125820.1 and CT607880.2. On Feb 16, 2011 this sequence version replaced XM_002662847.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGGCGTCCG ACGAAGACAG CGATGAAGAT TTTGTGACTT ACGGGACTCC CTTAGAACCT 
CTGGAAGAAG ATGAACCCAG CAGAAAGCCA ATACCTGTGC ACGAGCAGAC TGTTAAAGAT 
GAGAAGGGTC GATACAAAAG GTTTCACGGG GCTTTTACTG GTGGTTTCTC CGCTGGTTAC 
TTCAACACAG TGGGCTCTAA AGAAGGCTGG ACGCCGTCAA CATTTGTATC ATCTCGACAA 
CAAAAGTCCG AGAAACACAA TGCCAGACCA GAGGACTTTA TGGATGAGGA GGACTTTGGT 
GAGCATGGTA TTGCACCGCG AGAGATCACC ACAACAGACG AGTTTGCCTC TGAGAGGAAA 
GATCAGATAA AGGACAAAGC GCGAGCTGTC AGCTCTCTCG CTGCTCTGAT TCCTGGTGAC 
CCTGGACTGC TGGAGGAGTT CATTGCCCCT GCACGGTCAT CCATTGGTGT GGAGCTGCTG 
AGAAAAATGG GCTGGAAAGA TGGCCAGGGA GTCGGTCCAA GATTGAAAAG AAAGCCACGC 
AAGCAAAACA CTGGCAGAGT TTATGGCTGT TCTTTGCCTC GCAATGGATC AGAAGAGTCT 
GAGGAGGACG ATGATGAATT TGCTCCAGAG AATGTGACCT TTGCCCCTAA AGATGTGGTC 
CCGGTGGACT TTACCCCTAA AGTGGACTCT CATGGTCTGG GTTACCGAGG GTTGAACCCT 
TTACAGGCCC TGGGTGGTGG ATCAGGATCA GGACATATAA ACCTTTTCAC GCTTCAGTCT 
GACAGAACAA CCAACCTATT TGGAGACAGA GCATCTGGAC AGGAGCGCAG GGGTGGGATT 
GCAGGACAGG CATTTGGAGT TGGTGCAATG GAAGAGGAAG ATGGCGATAT TTATCATAAA 
GACTCCATGT CAAACTATGA CAATGTGCTG GGAGGAGAAG AGCCAGGAGA TGGACTGTAC 
GGATGGACTG CTCCCCAACA GTACACTAAA AAGAAAAATG CTTTAAAAAG AGTTATGGCC 
TATTCTGGCA GGATTCTGGA TGGCTTTGCA TTGGCCTCAG AAGTCACAGA GATTAAAACG 
GTCTATCCTC CCCCTGATTT GCCTCGTGAT TTTCGACCTG TACATTACTT CCGTCCTGTG 
ATTGATCCAT CCACCGTCAG CCCCATCGTT GCTCAGGCAC TACAGCTCTC GCGTGGACAG 
CTTTCACAGG ATGCATCACA GCAGGGCCGC CACAAGTTAG ACTCCACTCA GAGACGTGAC 
ATGCTGGGAG AATCCGCTTT ACAGGGCCCC AGTTCTGTGT TTGAGCTGCT GGAAAGTAAA 
GATAGAGAGC GGCTGACTGA GATCCGCAAA GCAGCAGAGA GCCAGAAACC GTCGGAGAGT 
AACCTTTCGT CGGCTGTAGA TCGAGCCGTT GTGGTGGCTT CAGCTAAAGC AAAAGCTGCC 
GCTCTGCAAG CCCTCTCCAG CCGTTTCCAG TCAAGCTCCA CACAGCCTCA GCCTCCCTCT 
GAAACCCAGA TGGCCTTGAA TGCTTGGTCT GGACCCACTG CTGATGCTAG CAAAACCTTC 
AAACCATTCT CAAAGAATCC TCAGAAACAG GCCCGCTATG ATCTGTACAT TAGCAAACTT 
AAGCAGGGTG ATAAAGATGC TGTTGAGTTG AGTCTGGACT CCTCTATGAC AGAGTGGGAA 
AGAGGAAGAG AAAGAGAAGA ATTTGTGCGT GCTGCTTTAC TCTACAAGCC CAGCAGCTCA 
TCTCTCTCTT CACGCTTCAC ACATGGAAAA CATGAGGAGG ACACTGACAC TGTGGATGTT 
GCACAAGAGC AAGAGAATGA TGTGGATGAC AAACAGGCTG CTGTGAAGAT GAAGATGTTT 
GGGAAGCTTA CCAGAGACAC GTTTGAATGG CATCCTGATA AACTGTTGTG TAAAAGGTTC 
AATATTCCCG ATCCTTATCC AGGGTCCAGT ATGGTGGGAA TGCCTAAAGT AAAGAGAGAT 
AAGTACTCTG TCTTTAACTT CCTAACCATA CCGGATGGCA GCCAGGTCAA CCCAAGTGAT 
CCCAAACCTT CCAGCTCAAC CATTCCTCGA GTGACCGCAG AAGCCTCCAG TAAGAAATCT 
AGGTGGGACG TACCAGTGCA GGCATCTGAA CCTAAAGATG CAGTCAGTGC CTTTCTTAGT 
GAAACTCGCA GTGAAGTTTC AGCGACCCAG CAAACAGAGG CTGAGGTCAA GACCCAGACA 
GACGCTCTAC CTGCTTCTGC CACTTCAGAG GTAAAAGTGG CCCAATCTGT TGAGAAGCAA 
TCTGATCAAA AGAATGAAGA GGAGGAGGAG GAGGAGGAAG AAGAGGTGAG GCCTTCAATG 
GATCTCTTTA AAGCCATCTT TGCCAGCTCA TCTGATGAGA AAAGCTCCTC TTCATCTGAA 
GATGAGGCTG AAGAGGAGGA AGAGTTGGCC CCTCCAACAT CTGAAGCAGC CCAGAGCACT 
ACTACATCTG GGACCGTGAT TCCACCCATC CCGGCTCAGT TCACTCCTGC TCCTGACATC 
AACAAAGCAA TGGATTTGAA GCATCTCACA GTCCAGAGTG TGCCATCTGC TGAAACTACA 
GCCCAAAGTA CCCAATCCTC CTTAAATGCT CCAGCTAAAT CACAAGGCCT GGACGAAGAG 
GAGTTTGGCC CCAGACTGCC ACCTCCTGGG TTTGTGCCAT CTACACACTC ACCGCAAATG 
AAGAAACAGA AGAAGAAAGA TAAAGAGAAG CACAAAGGCA AAAAACACAA GAAAGAGAAA 
AAGAAGAAAA AGAGCAAGAA GCATAAGCAT AAAGGGAAGC AGAAGAAGAG GCATGAGGAG 
TCTGACAGCA GCTCAGACGA CACCGACTCC AACAGTGAAG ATGTAGATAG AGATGTGCCC 
ACCAGTGAAC TGCTCCAGAG GTTAAAAAAT CTCAAGAACA AGAGGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001191052.1
CDS	14..2941
Translation	MASDEDSDEDFVTYGTPLEPLEEDEPSRKPIPVHEQTVKDEKGRYKRFHGAFTGGFSAGYFNTVGSKEGWTPSTFVSSRQQKSEKHNARPEDFMDEEDFGEHGIAPREITTTDEFASERKDQIKDKARAVSSLAALIPGDPGLLEEFIAPARSSIGVELLRKMGWKDGQGVGPRLKRKPRKQNTGRVYGCSLPRNGSEESEEDDDEFAPENVTFAPKDVVPVDFTPKVDSHGLGYRGLNPLQALGGGSGSGHINLFTLQSDRTTNLFGDRASGQERRGGIAGQAFGVGAMEEEDGDIYHKDSMSNYDNVLGGEEPGDGLYGWTAPQQYTKKKNALKRVMAYSGRILDGFALASEVTEIKTVYPPPDLPRDFRPVHYFRPVIDPSTVSPIVAQALQLSRGQLSQDASQQGRHKLDSTQRRDMLGESALQGPSSVFELLESKDRERLTEIRKAAESQKPSESNLSSAVDRAVVVASAKAKAAALQALSSRFQSSSTQPQPPSETQMALNAWSGPTADASKTFKPFSKNPQKQARYDLYISKLKQGDKDAVELSLDSSMTEWERGREREEFVRAALLYKPSSSSLSSRFTHGKHEEDTDTVDVAQEQENDVDDKQAAVKMKMFGKLTRDTFEWHPDKLLCKRFNIPDPYPGSSMVGMPKVKRDKYSVFNFLTIPDGSQVNPSDPKPSSSTIPRVTAEASSKKSRWDVPVQASEPKDAVSAFLSETRSEVSATQQTEAEVKTQTDALPASATSEVKVAQSVEKQSDQKNEEEEEEEEEEVRPSMDLFKAIFASSSDEKSSSSSEDEAEEEEELAPPTSEAAQSTTTSGTVIPPIPAQFTPAPDINKAMDLKHLTVQSVPSAETTAQSTQSSLNAPAKSQGLDEEEFGPRLPPPGFVPSTHSPQMKKQKKKDKEKHKGKKHKKEKKKKKSKKHKHKGKQKKRHEESDSSSDDTDSNSEDVDRDVPTSELLQRLKNLKNKR

Target ORF information:

RefSeq Version	NM_001204123.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio G patch domain containing 1 (gpatch1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001204123.1

ORF Insert Sequence:

ATGGCGTCCG ACGAAGACAG CGATGAAGAT TTTGTGACTT ACGGGACTCC CTTAGAACCT 
CTGGAAGAAG ATGAACCCAG CAGAAAGCCA ATACCTGTGC ACGAGCAGAC TGTTAAAGAT 
GAGAAGGGTC GATACAAAAG GTTTCACGGG GCTTTTACTG GTGGTTTCTC CGCTGGTTAC 
TTCAACACAG TGGGCTCTAA AGAAGGCTGG ACGCCGTCAA CATTTGTATC ATCTCGACAA 
CAAAAGTCCG AGAAACACAA TGCCAGACCA GAGGACTTTA TGGATGAGGA GGACTTTGGT 
GAGCATGGTA TTGCACCGCG AGAGATCACC ACAACAGACG AGTTTGCCTC TGAGAGGAAA 
GATCAGATAA AGGACAAAGC GCGAGCTGTC AGCTCTCTCG CTGCTCTGAT TCCTGGTGAC 
CCTGGACTGC TGGAGGAGTT CATTGCCCCT GCACGGTCAT CCATTGGTGT GGAGCTGCTG 
AGAAAAATGG GCTGGAAAGA TGGCCAGGGA GTCGGTCCAA GATTGAAAAG AAAGCCACGC 
AAGCAAAACA CTGGCAGAGT TTATGGCTGT TCTTTGCCTC GCAATGGATC AGAAGAGTCT 
GAGGAGGACG ATGATGAATT TGCTCCAGAG AATGTGACCT TTGCCCCTAA AGATGTGGTC 
CCGGTGGACT TTACCCCTAA AGTGGACTCT CATGGTCTGG GTTACCGAGG GTTGAACCCT 
TTACAGGCCC TGGGTGGTGG ATCAGGATCA GGACATATAA ACCTTTTCAC GCTTCAGTCT 
GACAGAACAA CCAACCTATT TGGAGACAGA GCATCTGGAC AGGAGCGCAG GGGTGGGATT 
GCAGGACAGG CATTTGGAGT TGGTGCAATG GAAGAGGAAG ATGGCGATAT TTATCATAAA 
GACTCCATGT CAAACTATGA CAATGTGCTG GGAGGAGAAG AGCCAGGAGA TGGACTGTAC 
GGATGGACTG CTCCCCAACA GTACACTAAA AAGAAAAATG CTTTAAAAAG AGTTATGGCC 
TATTCTGGCA GGATTCTGGA TGGCTTTGCA TTGGCCTCAG AAGTCACAGA GATTAAAACG 
GTCTATCCTC CCCCTGATTT GCCTCGTGAT TTTCGACCTG TACATTACTT CCGTCCTGTG 
ATTGATCCAT CCACCGTCAG CCCCATCGTT GCTCAGGCAC TACAGCTCTC GCGTGGACAG 
CTTTCACAGG ATGCATCACA GCAGGGCCGC CACAAGTTAG ACTCCACTCA GAGACGTGAC 
ATGCTGGGAG AATCCGCTTT ACAGGGCCCC AGTTCTGTGT TTGAGCTGCT GGAAAGTAAA 
GATAGAGAGC GGCTGACTGA GATCCGCAAA GCAGCAGAGA GCCAGAAACC GTCGGAGAGT 
AACCTTTCGT CGGCTGTAGA TCGAGCCGTT GTGGTGGCTT CAGCTAAAGC AAAAGCTGCC 
GCTCTGCAAG CCCTCTCCAG CCGTTTCCAG TCAAGCTCCA CACAGCCTCA GCCTCCCTCT 
GAAACCCAGA TGGCCTTGAA TGCTTGGTCT GGACCCACTG CTGATGCTAG CAAAACCTTC 
AAACCATTCT CAAAGAATCC TCAGAAACAG GCCCGCTATG ATCTGTACAT TAGCAAACTT 
AAGCAGGGTG ATAAAGATGC TGTTGAGTTG AGTCTGGACT CCTCTATGAC AGAGTGGGAA 
AGAGGAAGAG AAAGAGAAGA ATTTGTGCGT GCTGCTTTAC TCTACAAGCC CAGCAGCTCA 
TCTCTCTCTT CACGCTTCAC ACATGGAAAA CATGAGGAGG ACACTGACAC TGTGGATGTT 
GCACAAGAGC AAGAGAATGA TGTGGATGAC AAACAGGCTG CTGTGAAGAT GAAGATGTTT 
GGGAAGCTTA CCAGAGACAC GTTTGAATGG CATCCTGATA AACTGTTGTG TAAAAGGTTC 
AATATTCCCG ATCCTTATCC AGGGTCCAGT ATGGTGGGAA TGCCTAAAGT AAAGAGAGAT 
AAGTACTCTG TCTTTAACTT CCTAACCATA CCGGATGGCA GCCAGGTCAA CCCAAGTGAT 
CCCAAACCTT CCAGCTCAAC CATTCCTCGA GTGACCGCAG AAGCCTCCAG TAAGAAATCT 
AGGTGGGACG TACCAGTGCA GGCATCTGAA CCTAAAGATG CAGTCAGTGC CTTTCTTAGT 
GAAACTCGCA GTGAAGTTTC AGCGACCCAG CAAACAGAGG CTGAGGTCAA GACCCAGACA 
GACGCTCTAC CTGCTTCTGC CACTTCAGAG GTAAAAGTGG CCCAATCTGT TGAGAAGCAA 
TCTGATCAAA AGAATGAAGA GGAGGAGGAG GAGGAGGAAG AAGAGGTGAG GCCTTCAATG 
GATCTCTTTA AAGCCATCTT TGCCAGCTCA TCTGATGAGA AAAGCTCCTC TTCATCTGAA 
GATGAGGCTG AAGAGGAGGA AGAGTTGGCC CCTCCAACAT CTGAAGCAGC CCAGAGCACT 
ACTACATCTG GGACCGTGAT TCCACCCATC CCGGCTCAGT TCACTCCTGC TCCTGACATC 
AACAAAGCAA TGGATTTGAA GCATCTCACA GTCCAGAGTG TGCCATCTGC TGAAACTACA 
GCCCAAAGTA CCCAATCCTC CTTAAATGCT CCAGCTAAAT CACAAGGCCT GGACGAAGAG 
GAGTTTGGCC CCAGACTGCC ACCTCCTGGG TTTGTGCCAT CTACACACTC ACCGCAAATG 
AAGAAACAGA AGAAGAAAGA TAAAGAGAAG CACAAAGGCA AAAAACACAA GAAAGAGAAA 
AAGAAGAAAA AGAGCAAGAA GCATAAGCAT AAAGGGAAGC AGAAGAAGAG GCATGAGGAG 
TCTGACAGCA GCTCAGACGA CACCGACTCC AACAGTGAAG ATGTAGATAG AGATGTGCCC 
ACCAGTGAAC TGCTCCAGAG GTTAAAAAAT CTCAAGAACA AGAGGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

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gpatch1 cDNA ORF clone, Danio rerio(zebrafish)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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