psmb11a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	psmb11a
Entrez Gene ID	446135
Full Name	proteasome subunit beta 11a
Synonyms	beta5ta,si:ch211-14a17.13
General protein information	Preferred Names proteasome subunit beta 11a Names proteasome subunit beta type-11 proteasome subunit beta 5ta
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001007178.1	NP_001007179.1	proteasome subunit beta type-11

Pathways from BioSystems

Homologies

	PSMB11	XP_002805028.1
Bos taurus (cattle)	PSMB11	NP_001092856.1
Mus musculus (house mouse)	Psmb11	NP_780413.1
Danio rerio (zebrafish)	psmb11b	XP_002667581.3
Pan troglodytes (chimpanzee)	PSMB11	XP_522799.2
Rattus norvegicus (Norway rat)	Psmb11	NP_001099502.1
Danio rerio (zebrafish)	si:ch211-14a17.13	NP_001007179.1
Homo sapiens (human)	PSMB11	NP_001093250.1
Canis lupus familiaris (dog)	PSMB11	XP_003639262.1
Xenopus tropicalis (tropical clawed frog)	psmb11	XP_002941563.1

Gene Ontology
Bibliography

Related articles in PubMed

Alternative haplotypes of antigen processing genes in zebrafish diverged early in vertebrate evolution.
McConnell SC, Hernandez KM, Wcisel DJ, Kettleborough RN, Stemple DL, Yoder JA, Andrade J, de Jong JL
Proceedings of the National Academy of Sciences of the United States of America113(34)E5014-23(2016 08)

Comparative genomic analysis of the proteasome ?5t subunit gene: implications for the origin and evolution of thymoproteasomes.
Sutoh Y, Kondo M, Ohta Y, Ota T, Tomaru U, Flajnik MF, Kasahara M
Immunogenetics64(1)49-58(2012 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following psmb11a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the psmb11a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa01669	NM_001007178.1 Latest version!	Danio rerio proteasome 20S subunit beta 11a (psmb11a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

psmb11a ( NM_001007178.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001007179.1 Danio rerio proteasome 20S subunit beta 11a (psmb11a), mRNA.

Price & Availability↑

CloneID	ODa01669
Clone ID Related Accession (Same CDS sequence)	NM_001007178.1
Accession Version	NM_001007178.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1128bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-09-15
Organism	Danio rerio(zebrafish)
Product	proteasome subunit beta type-11
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AL772295.6.

ATGGCTCTTC AGGATGTTTG TGGTTTCACA GAGACATTTG ATGACACCAA CTCATCCAGT 
TACCAACCAA ATGAGATGGG ATACATGTGG AGGACACCGT TCGAGTTTGA CAGAGAGAGT 
TCTTTTAATT TTCACCTTCC AGCTCAGCAG AGCTGCAGAA AAAACACAGC ATCAACTCTT 
TTCTCTTCAA CTCTTTCACC TCACGAGCAA CCATTTCATT TGTCACATGG GACCACCACT 
TTGGGTTTTA TATTCCAGGA TGGTGTAATA GCTGCTGCGG ACACTCGCGC CAGCTGTAAA 
GGTCTAGTTT GCTGCCCGAT AACTCATAAG ATTATGCCTA TCCACTCTCA CCTGGTGGTG 
AACACCTCAG GTAGCGGTGC TGATTGTATG CTGTGGGAAC GGATTCTCAC ACGTGAGATG 
AGGCTTTACC AGCTTCGCCA TCGAACGAGA CTCAGCATAA ATGGAGCCGC AAAGCTGCTC 
TCCACTATGC TTCATCCATT CAAAGGGACT AATGTCTGTG TTGCAGCTAC TCTTTGTGGA 
TGGGATGGAG AAGAATCTCA GATACAATGG AAAACAAGCA TGGGAACTGT AAATGTTAAT 
GAATCAATGG CTCAGGATTC CACTCTGTCT GCAATTTCTG ATGAATCTGC TCTAGGTAGT 
GAAAAAAGAG CTTCAATAAG TGAGCAGGAG GAGATCCTGA AGGACGTGCC AGATCAACAG 
AATCGCTCTA CTTTTGGAGG ACGGTTTGGT CCCAGGGTAT GCTATGTTTG CAGTGACGGC 
TTGCAACTGA ACGGAGAGAT AATATCAGTG GGTTCAGGGT CACCCTATGC ATACGCCGTG 
CTTGATGACG GATGGAGATG GGGAATGACT GTAGATGAGG CAGTGGGACT GGCCCGGGAG 
GCTGTTTTCA GAGCCACTCA CTGGGATGCC TACTCTGGGA ATAATGTAGA CCTTTTCTAT 
ATCACTGCCC GTGGCTGGAG ACGCAGAGAG AGAGAGGATC TAAAGGAGGA GTACTACAGA 
GAAAGGGAGA GAGAGAGGGA GAAGATCAAG GAGAGGGAGG AAGAGAGACA GAAGAGAGAG 
CTGGTTGAAG GGGATGATGA TGATGTATAT TCAGTACAAT GCGGATAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001007179.1
CDS	1..1128
Translation	MALQDVCGFTETFDDTNSSSYQPNEMGYMWRTPFEFDRESSFNFHLPAQQSCRKNTASTLFSSTLSPHEQPFHLSHGTTTLGFIFQDGVIAAADTRASCKGLVCCPITHKIMPIHSHLVVNTSGSGADCMLWERILTREMRLYQLRHRTRLSINGAAKLLSTMLHPFKGTNVCVAATLCGWDGEESQIQWKTSMGTVNVNESMAQDSTLSAISDESALGSEKRASISEQEEILKDVPDQQNRSTFGGRFGPRVCYVCSDGLQLNGEIISVGSGSPYAYAVLDDGWRWGMTVDEAVGLAREAVFRATHWDAYSGNNVDLFYITARGWRRREREDLKEEYYREREREREKIKEREEERQKRELVEGDDDDVYSVQCG

Target ORF information:

RefSeq Version	NM_001007178.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio proteasome 20S subunit beta 11a (psmb11a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001007178.1

ORF Insert Sequence:

ATGGCTCTTC AGGATGTTTG TGGTTTCACA GAGACATTTG ATGACACCAA CTCATCCAGT 
TACCAACCAA ATGAGATGGG ATACATGTGG AGGACACCGT TCGAGTTTGA CAGAGAGAGT 
TCTTTTAATT TTCACCTTCC AGCTCAGCAG AGCTGCAGAA AAAACACAGC ATCAACTCTT 
TTCTCTTCAA CTCTTTCACC TCACGAGCAA CCATTTCATT TGTCACATGG GACCACCACT 
TTGGGTTTTA TATTCCAGGA TGGTGTAATA GCTGCTGCGG ACACTCGCGC CAGCTGTAAA 
GGTCTAGTTT GCTGCCCGAT AACTCATAAG ATTATGCCTA TCCACTCTCA CCTGGTGGTG 
AACACCTCAG GTAGCGGTGC TGATTGTATG CTGTGGGAAC GGATTCTCAC ACGTGAGATG 
AGGCTTTACC AGCTTCGCCA TCGAACGAGA CTCAGCATAA ATGGAGCCGC AAAGCTGCTC 
TCCACTATGC TTCATCCATT CAAAGGGACT AATGTCTGTG TTGCAGCTAC TCTTTGTGGA 
TGGGATGGAG AAGAATCTCA GATACAATGG AAAACAAGCA TGGGAACTGT AAATGTTAAT 
GAATCAATGG CTCAGGATTC CACTCTGTCT GCAATTTCTG ATGAATCTGC TCTAGGTAGT 
GAAAAAAGAG CTTCAATAAG TGAGCAGGAG GAGATCCTGA AGGACGTGCC AGATCAACAG 
AATCGCTCTA CTTTTGGAGG ACGGTTTGGT CCCAGGGTAT GCTATGTTTG CAGTGACGGC 
TTGCAACTGA ACGGAGAGAT AATATCAGTG GGTTCAGGGT CACCCTATGC ATACGCCGTG 
CTTGATGACG GATGGAGATG GGGAATGACT GTAGATGAGG CAGTGGGACT GGCCCGGGAG 
GCTGTTTTCA GAGCCACTCA CTGGGATGCC TACTCTGGGA ATAATGTAGA CCTTTTCTAT 
ATCACTGCCC GTGGCTGGAG ACGCAGAGAG AGAGAGGATC TAAAGGAGGA GTACTACAGA 
GAAAGGGAGA GAGAGAGGGA GAAGATCAAG GAGAGGGAGG AAGAGAGACA GAAGAGAGAG 
CTGGTTGAAG GGGATGATGA TGATGTATAT TCAGTACAAT GCGGATAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Alternative haplotypes of antigen processing genes in zebrafish diverged early in vertebrate evolution.
Proceedings of the National Academy of Sciences of the United States of America113(34)E5014-23(2016 08)
McConnell SC,Hernandez KM,Wcisel DJ,Kettleborough RN,Stemple DL,Yoder JA,Andrade J,de Jong JL

Comparative genomic analysis of the proteasome ?5t subunit gene: implications for the origin and evolution of thymoproteasomes.
Immunogenetics64(1)49-58(2012 Jan)
Sutoh Y,Kondo M,Ohta Y,Ota T,Tomaru U,Flajnik MF,Kasahara M