sycp1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	sycp1
Entrez Gene ID	402797
Full Name	synaptonemal complex protein 1
General protein information	Preferred Names synaptonemal complex protein 1 Names synaptonemal complex protein 1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001118894.1	NP_001112366.1	synaptonemal complex protein 1

Pathways from BioSystems

Homologies

Homo sapiens (human)	SYCP1	NP_001269470.1
Canis lupus familiaris (dog)	SYCP1	XP_857086.1
Rattus norvegicus (Norway rat)	Sycp1	NP_036942.1
Xenopus tropicalis (tropical clawed frog)	sycp1	XP_004911444.1
Pan troglodytes (chimpanzee)	SYCP1	XP_513674.3
Gallus gallus (chicken)	SYCP1	XP_004935063.1
Danio rerio (zebrafish)	sycp1	NP_001112366.1
	SYCP1	XP_001111808.1
Bos taurus (cattle)	SYCP1	XP_003585895.1
Mus musculus (house mouse)	Sycp1	NP_035646.2

Gene Ontology
Bibliography

Related articles in PubMed

Xia H, Zhong C, Wu X, Chen J, Tao B, Xia X, Shi M, Zhu Z, Trudeau VL, Hu W
Genetics(2017 Dec)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Telomere distribution pattern and synapsis initiation during spermatogenesis in zebrafish.
Saito K, Sakai C, Kawasaki T, Sakai N
Developmental dynamics : an official publication of the American Association of Anatomists243(11)1448-56(2014 Nov)

Multiple thyrotropin ?-subunit and thyrotropin receptor-related genes arose during vertebrate evolution.
Maugars G, Dufour S, Cohen-Tannoudji J, Qu?rat B
PloS one9(11)e111361(2014)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Data from male/female transgenic zebrafish suggest proximal promoter fragment coupled to first exon/first intron of sycp1 gene contains information required for cell-specific expression of sycp1 in spermatocytes/spermatids and early primary oocytes.
Title: A promoter fragment of the sycp1 gene is sufficient to drive transgene expression in male and female meiotic germ cells in zebrafish.

The following sycp1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the sycp1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa35873	NM_001118894.1 Latest version!	Danio rerio synaptonemal complex protein 1 (sycp1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	20	$629.30 $899.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

sycp1 ( NM_001118894.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001112366.1 Danio rerio synaptonemal complex protein 1 (sycp1), mRNA.

Price & Availability↑

CloneID	ODa35873
Clone ID Related Accession (Same CDS sequence)	NM_001118894.1
Accession Version	NM_001118894.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3003bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	synaptonemal complex protein 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BX005150.5. On Mar 7, 2008 this sequence version replaced XM_679090.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGCAAAAAG CATTCAACTT CAAACTGTTG GTGCCCTCAA GAGCTCATTT ACATCAAGTG 
TCTGCAGTGA AGCCTCAGGA AACAGGCTTG TTTGAAGAAA AAACGCTTTT TTCTGCTTCA 
AATCAGAGTT ATAGTAAGTG TTCAGATATG GAGACGAGCC TGCCATTTCC ATCCAAAATG 
GTGCTTCCTA CTAAGTCACC AAGGGCTGAG GGTATGAAGA AGGCTGCAGT CTTGCCAATG 
GAAAAGGAAG AGACGTCTTT AAGATCTAGC CAGCTGTACT CCAAACTGCT CGATGAAGCT 
GAGAAAATCA AACTCTGGAA GTTCAGAACC GATTCAGATA TTTCACAAAA AGACAGAAAA 
ATTCAGGAGA ACAGAAAAAC CATAGAGACA CAGCGCAAAG CTATTCAGGA GCTGCAGTTC 
GCAAATGAAA GTCTAAGCAT TAAATTAGAG GATCAACTCA ATGAGAATGA AGACCTTAGA 
AATAAAACTA ATGCAACCAG AAATTTGTGT AACATACTAA AGGACACATT TGAGAGAACT 
GCTGAGAAAA TGAATTTTTT TGAAGCTGAA CGAGAAGAAA CTCATGATCT GTTCATGCAG 
ATCAGTGAGA ATGTTCAGAG GATGGTGGCA GCATTTGAAA GTCTTCGGAA GCAGGCAGAA 
GCAGATCAGC AGGATATGTT AAAATTAAGA GAATGCCTTG CACAGTTTGA AGATCTTAAA 
GTGCAGCTTG AGAGTGAATG CCATTTCAAG GAGGAGCAGG TTGCCATTTT TCAAGAAAAA 
CTCCAAAAGA AAGAGAATGA TTTCAAAGAT GTTTCCCTCA AACTTCAGGA GACACAGCAC 
ATCTGCAGTG TGCTAGAGGA GTCTTCAAGA AAACACCAGG AACTACTCCA CAGTGCTACA 
CAGGACCGAG AAGCACTTGA AGAGAAGCTC AATGTGATAC AGCAGCTCAA ATGGGAGCTG 
GAGGAAAACC AGAGAGTCTT AACTTACAAA CTTGAACAAA CCATGGAAAA CCATGAGAAA 
CTTTTTCAAA AGAAAGACAC AGAAATAGAG GACCTGAACA ACATCAAAGA GCAACGGACA 
AACCAACTTG CGGATATGCA GCTGACAGTG AATTCTTTGC AGTCCTCACT AACGTCTGAA 
ATACAGAGGG CACAAGACCT TGAGACAAAA CTAAGCTCAG TGATGAATGA TCTCAGTGAA 
AAAAATGCAG AAATAGAAGT TACCAAGAGC CAAAATGTGG ACCACTGCGA GCAATTACAG 
ATACTCAGAA AAGACCTGGA TGAGAAGTCC AACTCTCTTT GGTCCATAAA GGAGGAATTA 
AAGGCTAATG AGACTCAGAT ACTCAAACTG ATTACCTCAC TTGAAGAGAA ACAAAGTGAA 
GCAAATCATT TGAAGGACAC AGTAGAGAAC ATCACCACAG AAAATAAAAG CATGCAGGAG 
ACCCTGACTA AAGTTAGATG TGAAAATGAA AACCTTCAAG AACAAGTCAG TTTGAAAGAG 
GCTAAATTGA AAGAGATGGA GGAAGAATTG TCAGGAGCTT TAGAGAGTCG TTGTAAATCA 
TCAAAAAAGG TGGAAAAATT GGAGAGGGAC ATAAAACAAG AGAAGGAAAA AAATAAGGAG 
CTGAAACTGA AGCTTAATGA CCTGCAGACA CAGAAAGACA CCATTCAAAA GCAGGCAGAG 
AGTGGTGCCT TAGAAAAGAA AGTCCTTCAG TGTCAACTAA TGGAAAGCAA AGCAAATGCA 
GAAAGAGAGA AGACTGAAGT AGAGAAACTT GAGAGAGAAA AACGACAGCT TCAAGAGCAG 
GTAGATATTT TATCAGCAAA AATCACTGGG CAAGATGAAG AGAGTAGAAA TGTTCAGGAG 
CAGTTGAGAG AGAGTGGCAA AGGTGCAAAG AAAGAACTTC TGATGAAAGA CAAGCAAATC 
AAAGCTCTGG ACACAAAACT GACTAATCTT AAAACAAAAC TAGAAACCAA AACAAAGGCT 
CACGAAGAAT GTCTGAAAGA GGTGAAGGAA TTGAAGGAAG ATTTGGATCG TGTAAAGAAA 
CATCACAACG AGGAGCTTCA GAAAATAAGA TCAGACCTTC ATGAGAAATC CACATCTGAG 
GCACAACTCG ACCTTGAGGT GCATAAATTG AAGCAAACAG CCACGGAAGC ATTGAAGAAT 
AAAGATGAGA CCGAAATCAA ATGCCAGCAG AAGATATCAG ACATGGTTGC TTTGATGGAG 
AGGCACAAGC ATGAGTATGA CAAAATGTTA GAAGAAAAAG ATGCAGAGCT GAGTGAAAAA 
CGAATGAAAG AAGCTGAAGT CAATGCAAGC AAAGCCTCAC TGGAACTGGA GCTGTCCCAC 
TTGCAAGTGG AGAATGATGA GCTGAGAGAA CAACTTGAAA AGCTAAAAGC AGAAAAGGTG 
GTCCTGAAGA CACCAGTGTC ACGTTGTGAA AAAGACACAC TTCAGCAGAT AACTGACAAC 
AAAGCAAAGA AAGGTAGAAA CAAAATGTCC AAAACACCTA AAGCTAGCTG CACGAAGAGG 
AATGTTTACA ATCTTTTAAA TGATGAAGAA AATGAATCTC CAACAAGCAA TGCATCTTGC 
ACTCCTGCTC GAGAAGTGCA GGAAGTCCTT CATAACCCAT TATGGACCCG GAGCAAAGCA 
ACTGGAACAA CGCCTCAAAT AAAGTCATTC CGAATTCGCA CACCTCCCAC ACCTGCGATT 
ATGGGGTCTT GGAAGAAAAA TATTTTGAAG CTGGACCCGA AGTCAGACAC CTCAGACAGC 
AATGATATAC TGAGTTTCTC TCCAAGACCC GTTAAATCAA AGAAACCAAT GCAGCCAAAA 
GATCCAAACA CAGAGAGCCT GGACATGTTT AACAAGGTGC AGGTGCAGAG TTCATTCATG 
AATAAGTCTC CAGGTACAGC GTTGAAACTG GCTGCGATAA AGCGAATGCG AGATGCTGGA 
TGGACCACCG TCAGCAGTTC AGATAAGAAG AAAAAAAAAG TAACAGACAA AATCTTTGCT 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001112366.1
CDS	85..3087
Translation	MQKAFNFKLLVPSRAHLHQVSAVKPQETGLFEEKTLFSASNQSYSKCSDMETSLPFPSKMVLPTKSPRAEGMKKAAVLPMEKEETSLRSSQLYSKLLDEAEKIKLWKFRTDSDISQKDRKIQENRKTIETQRKAIQELQFANESLSIKLEDQLNENEDLRNKTNATRNLCNILKDTFERTAEKMNFFEAEREETHDLFMQISENVQRMVAAFESLRKQAEADQQDMLKLRECLAQFEDLKVQLESECHFKEEQVAIFQEKLQKKENDFKDVSLKLQETQHICSVLEESSRKHQELLHSATQDREALEEKLNVIQQLKWELEENQRVLTYKLEQTMENHEKLFQKKDTEIEDLNNIKEQRTNQLADMQLTVNSLQSSLTSEIQRAQDLETKLSSVMNDLSEKNAEIEVTKSQNVDHCEQLQILRKDLDEKSNSLWSIKEELKANETQILKLITSLEEKQSEANHLKDTVENITTENKSMQETLTKVRCENENLQEQVSLKEAKLKEMEEELSGALESRCKSSKKVEKLERDIKQEKEKNKELKLKLNDLQTQKDTIQKQAESGALEKKVLQCQLMESKANAEREKTEVEKLEREKRQLQEQVDILSAKITGQDEESRNVQEQLRESGKGAKKELLMKDKQIKALDTKLTNLKTKLETKTKAHEECLKEVKELKEDLDRVKKHHNEELQKIRSDLHEKSTSEAQLDLEVHKLKQTATEALKNKDETEIKCQQKISDMVALMERHKHEYDKMLEEKDAELSEKRMKEAEVNASKASLELELSHLQVENDELREQLEKLKAEKVVLKTPVSRCEKDTLQQITDNKAKKGRNKMSKTPKASCTKRNVYNLLNDEENESPTSNASCTPAREVQEVLHNPLWTRSKATGTTPQIKSFRIRTPPTPAIMGSWKKNILKLDPKSDTSDSNDILSFSPRPVKSKKPMQPKDPNTESLDMFNKVQVQSSFMNKSPGTALKLAAIKRMRDAGWTTVSSSDKKKKKVTDKIFA

Target ORF information:

RefSeq Version	NM_001118894.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio synaptonemal complex protein 1 (sycp1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001118894.1

ORF Insert Sequence:

ATGCAAAAAG CATTCAACTT CAAACTGTTG GTGCCCTCAA GAGCTCATTT ACATCAAGTG 
TCTGCAGTGA AGCCTCAGGA AACAGGCTTG TTTGAAGAAA AAACGCTTTT TTCTGCTTCA 
AATCAGAGTT ATAGTAAGTG TTCAGATATG GAGACGAGCC TGCCATTTCC ATCCAAAATG 
GTGCTTCCTA CTAAGTCACC AAGGGCTGAG GGTATGAAGA AGGCTGCAGT CTTGCCAATG 
GAAAAGGAAG AGACGTCTTT AAGATCTAGC CAGCTGTACT CCAAACTGCT CGATGAAGCT 
GAGAAAATCA AACTCTGGAA GTTCAGAACC GATTCAGATA TTTCACAAAA AGACAGAAAA 
ATTCAGGAGA ACAGAAAAAC CATAGAGACA CAGCGCAAAG CTATTCAGGA GCTGCAGTTC 
GCAAATGAAA GTCTAAGCAT TAAATTAGAG GATCAACTCA ATGAGAATGA AGACCTTAGA 
AATAAAACTA ATGCAACCAG AAATTTGTGT AACATACTAA AGGACACATT TGAGAGAACT 
GCTGAGAAAA TGAATTTTTT TGAAGCTGAA CGAGAAGAAA CTCATGATCT GTTCATGCAG 
ATCAGTGAGA ATGTTCAGAG GATGGTGGCA GCATTTGAAA GTCTTCGGAA GCAGGCAGAA 
GCAGATCAGC AGGATATGTT AAAATTAAGA GAATGCCTTG CACAGTTTGA AGATCTTAAA 
GTGCAGCTTG AGAGTGAATG CCATTTCAAG GAGGAGCAGG TTGCCATTTT TCAAGAAAAA 
CTCCAAAAGA AAGAGAATGA TTTCAAAGAT GTTTCCCTCA AACTTCAGGA GACACAGCAC 
ATCTGCAGTG TGCTAGAGGA GTCTTCAAGA AAACACCAGG AACTACTCCA CAGTGCTACA 
CAGGACCGAG AAGCACTTGA AGAGAAGCTC AATGTGATAC AGCAGCTCAA ATGGGAGCTG 
GAGGAAAACC AGAGAGTCTT AACTTACAAA CTTGAACAAA CCATGGAAAA CCATGAGAAA 
CTTTTTCAAA AGAAAGACAC AGAAATAGAG GACCTGAACA ACATCAAAGA GCAACGGACA 
AACCAACTTG CGGATATGCA GCTGACAGTG AATTCTTTGC AGTCCTCACT AACGTCTGAA 
ATACAGAGGG CACAAGACCT TGAGACAAAA CTAAGCTCAG TGATGAATGA TCTCAGTGAA 
AAAAATGCAG AAATAGAAGT TACCAAGAGC CAAAATGTGG ACCACTGCGA GCAATTACAG 
ATACTCAGAA AAGACCTGGA TGAGAAGTCC AACTCTCTTT GGTCCATAAA GGAGGAATTA 
AAGGCTAATG AGACTCAGAT ACTCAAACTG ATTACCTCAC TTGAAGAGAA ACAAAGTGAA 
GCAAATCATT TGAAGGACAC AGTAGAGAAC ATCACCACAG AAAATAAAAG CATGCAGGAG 
ACCCTGACTA AAGTTAGATG TGAAAATGAA AACCTTCAAG AACAAGTCAG TTTGAAAGAG 
GCTAAATTGA AAGAGATGGA GGAAGAATTG TCAGGAGCTT TAGAGAGTCG TTGTAAATCA 
TCAAAAAAGG TGGAAAAATT GGAGAGGGAC ATAAAACAAG AGAAGGAAAA AAATAAGGAG 
CTGAAACTGA AGCTTAATGA CCTGCAGACA CAGAAAGACA CCATTCAAAA GCAGGCAGAG 
AGTGGTGCCT TAGAAAAGAA AGTCCTTCAG TGTCAACTAA TGGAAAGCAA AGCAAATGCA 
GAAAGAGAGA AGACTGAAGT AGAGAAACTT GAGAGAGAAA AACGACAGCT TCAAGAGCAG 
GTAGATATTT TATCAGCAAA AATCACTGGG CAAGATGAAG AGAGTAGAAA TGTTCAGGAG 
CAGTTGAGAG AGAGTGGCAA AGGTGCAAAG AAAGAACTTC TGATGAAAGA CAAGCAAATC 
AAAGCTCTGG ACACAAAACT GACTAATCTT AAAACAAAAC TAGAAACCAA AACAAAGGCT 
CACGAAGAAT GTCTGAAAGA GGTGAAGGAA TTGAAGGAAG ATTTGGATCG TGTAAAGAAA 
CATCACAACG AGGAGCTTCA GAAAATAAGA TCAGACCTTC ATGAGAAATC CACATCTGAG 
GCACAACTCG ACCTTGAGGT GCATAAATTG AAGCAAACAG CCACGGAAGC ATTGAAGAAT 
AAAGATGAGA CCGAAATCAA ATGCCAGCAG AAGATATCAG ACATGGTTGC TTTGATGGAG 
AGGCACAAGC ATGAGTATGA CAAAATGTTA GAAGAAAAAG ATGCAGAGCT GAGTGAAAAA 
CGAATGAAAG AAGCTGAAGT CAATGCAAGC AAAGCCTCAC TGGAACTGGA GCTGTCCCAC 
TTGCAAGTGG AGAATGATGA GCTGAGAGAA CAACTTGAAA AGCTAAAAGC AGAAAAGGTG 
GTCCTGAAGA CACCAGTGTC ACGTTGTGAA AAAGACACAC TTCAGCAGAT AACTGACAAC 
AAAGCAAAGA AAGGTAGAAA CAAAATGTCC AAAACACCTA AAGCTAGCTG CACGAAGAGG 
AATGTTTACA ATCTTTTAAA TGATGAAGAA AATGAATCTC CAACAAGCAA TGCATCTTGC 
ACTCCTGCTC GAGAAGTGCA GGAAGTCCTT CATAACCCAT TATGGACCCG GAGCAAAGCA 
ACTGGAACAA CGCCTCAAAT AAAGTCATTC CGAATTCGCA CACCTCCCAC ACCTGCGATT 
ATGGGGTCTT GGAAGAAAAA TATTTTGAAG CTGGACCCGA AGTCAGACAC CTCAGACAGC 
AATGATATAC TGAGTTTCTC TCCAAGACCC GTTAAATCAA AGAAACCAAT GCAGCCAAAA 
GATCCAAACA CAGAGAGCCT GGACATGTTT AACAAGGTGC AGGTGCAGAG TTCATTCATG 
AATAAGTCTC CAGGTACAGC GTTGAAACTG GCTGCGATAA AGCGAATGCG AGATGCTGGA 
TGGACCACCG TCAGCAGTTC AGATAAGAAG AAAAAAAAAG TAACAGACAA AATCTTTGCT 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Genetics(2017 Dec)
Xia H,Zhong C,Wu X,Chen J,Tao B,Xia X,Shi M,Zhu Z,Trudeau VL,Hu W

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Telomere distribution pattern and synapsis initiation during spermatogenesis in zebrafish.
Developmental dynamics : an official publication of the American Association of Anatomists243(11)1448-56(2014 Nov)
Saito K,Sakai C,Kawasaki T,Sakai N

Multiple thyrotropin ?-subunit and thyrotropin receptor-related genes arose during vertebrate evolution.
PloS one9(11)e111361(2014)
Maugars G,Dufour S,Cohen-Tannoudji J,Qu?rat B

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sycp1 cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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