cabp5a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	cabp5a
Entrez Gene ID	393671
Full Name	calcium binding protein 5a
Synonyms	zgc:73060
General protein information	Preferred Names calcium binding protein 5a Names calcium binding protein 5a
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_005156000.3	XP_005156057.1	calcium binding protein 5a isoform X1
NM_200698.2	NP_956992.1	calcium binding protein 5a

Pathways from BioSystems

Homologies

Canis lupus familiaris (dog)	CABP5	XP_541529.2
Bos taurus (cattle)	CABP5	NP_777153.1
Rattus norvegicus (Norway rat)	Cabp5	NP_001102377.1
Danio rerio (zebrafish)	cabp5a	NP_956992.1
Mus musculus (house mouse)	Cabp5	NP_038905.1
Pan troglodytes (chimpanzee)	CABP5	XP_001154118.2
	LOC718484	XP_001111235.1
Danio rerio (zebrafish)	cabp5b	NP_001018568.1
Homo sapiens (human)	CABP5	NP_062829.1

Gene Ontology
Bibliography

Related articles in PubMed

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Characterization of the calcium binding protein family in zebrafish.
Di Donato V, Auer TO, Duroure K, Del Bene F
PloS one8(1)e53299(2013)

Expressed sequence tag analysis of zebrafish eye tissues for NEIBank.
Vihtelic TS, Fadool JM, Gao J, Thornton KA, Hyde DR, Wistow G
Molecular vision111083-100(2005 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following cabp5a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the cabp5a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa17532	NM_200698.2 Latest version!	Danio rerio calcium binding protein 5a (cabp5a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa17532	XM_005156000.3 Latest version!	Danio rerio calcium binding protein 5a (cabp5a), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

cabp5a ( NM_200698.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_956992.1 Danio rerio calcium binding protein 5a (cabp5a), mRNA.

Price & Availability↑

CloneID	ODa17532
Clone ID Related Accession (Same CDS sequence)	XM_005156000.3 , NM_200698.2
Accession Version	NM_200698.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 498bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	calcium binding protein 5a
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AL929495.21. On Jan 25, 2007 this sequence version replaced NM_200698.1. ##Evidence-Data-START## Transcript exon combination :: DN859342.1, DN897870.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3505370, SAMEA3505371 [ECO:0000348] ##Evidence-Data-END##

ATGACTGCAT GCATATTTCT ACGCGGAGCC AAAATTGACC GAGAGCTGGC GGATGATGAG 
ATTGAAGAGT TGCGTGAGGC CTTTAATGAG TTTGACAAAG ATAAGGATGG TCTGATCAGC 
TGTAAGGATC TGGGGAACCT GATGAGGACG ATGGGCTACA TGCCCACCGA GATGGAGCTG 
ATCGAGCTGG GCCAGAACAT CAACATGAAC CTGGGAGGCC GTGTGGACTT CGAGGACTTT 
GTGGAGCTCA TGACCCCGAA GCTTTTGGCA GAAACCGCAG GAATGATCGG CGTGAAGGAG 
CTCAGAGACG CTTTCAAAGA GTTTGATATG GACGGTGACG GTGCGATCAC CACTGAAGAA 
CTGCGCTGTG CGATGACGAA ATTACTGGGT GAACACATGA ACCGCAGAGA GATCGACGCC 
GTCGTCCGAG AGGCCGATAA TAACGGTGAC GGAACTGTAG ATTTTGAAGA ATTTGTGAAG 
ATGTTGTCGA GTGTGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_956992.1
CDS	127..624
Translation	MTACIFLRGAKIDRELADDEIEELREAFNEFDKDKDGLISCKDLGNLMRTMGYMPTEMELIELGQNINMNLGGRVDFEDFVELMTPKLLAETAGMIGVKELRDAFKEFDMDGDGAITTEELRCAMTKLLGEHMNRREIDAVVREADNNGDGTVDFEEFVKMLSSV

Target ORF information:

RefSeq Version	NM_200698.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio calcium binding protein 5a (cabp5a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_200698.2

ORF Insert Sequence:

ATGACTGCAT GCATATTTCT ACGCGGAGCC AAAATTGACC GAGAGCTGGC GGATGATGAG 
ATTGAAGAGT TGCGTGAGGC CTTTAATGAG TTTGACAAAG ATAAGGATGG TCTGATCAGC 
TGTAAGGATC TGGGGAACCT GATGAGGACG ATGGGCTACA TGCCCACCGA GATGGAGCTG 
ATCGAGCTGG GCCAGAACAT CAACATGAAC CTGGGAGGCC GTGTGGACTT CGAGGACTTT 
GTGGAGCTCA TGACCCCGAA GCTTTTGGCA GAAACCGCAG GAATGATCGG CGTGAAGGAG 
CTCAGAGACG CTTTCAAAGA GTTTGATATG GACGGTGACG GTGCGATCAC CACTGAAGAA 
CTGCGCTGTG CGATGACGAA ATTACTGGGT GAACACATGA ACCGCAGAGA GATCGACGCC 
GTCGTCCGAG AGGCCGATAA TAACGGTGAC GGAACTGTAG ATTTTGAAGA ATTTGTGAAG 
ATGTTGTCGA GTGTGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

cabp5a ( XM_005156000.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005156057.1 Danio rerio calcium binding protein 5a (cabp5a), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa17532
Clone ID Related Accession (Same CDS sequence)	XM_005156000.3 , NM_200698.2
Accession Version	XM_005156000.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 498bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	calcium binding protein 5a isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007123.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005156000.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGACTGCAT GCATATTTCT ACGCGGAGCC AAAATTGACC GAGAGCTGGC GGATGATGAG 
ATTGAAGAGT TGCGTGAGGC CTTTAATGAG TTTGACAAAG ATAAGGATGG TCTGATCAGC 
TGTAAGGATC TGGGGAACCT GATGAGGACG ATGGGCTACA TGCCCACCGA GATGGAGCTG 
ATCGAGCTGG GCCAGAACAT CAACATGAAC CTGGGAGGCC GTGTGGACTT CGAGGACTTT 
GTGGAGCTCA TGACCCCGAA GCTTTTGGCA GAAACCGCAG GAATGATCGG CGTGAAGGAG 
CTCAGAGACG CTTTCAAAGA GTTTGATATG GACGGTGACG GTGCGATCAC CACTGAAGAA 
CTGCGCTGTG CGATGACGAA ATTACTGGGT GAACACATGA ACCGCAGAGA GATCGACGCC 
GTCGTCCGAG AGGCCGATAA TAACGGTGAC GGAACTGTAG ATTTTGAAGA ATTTGTGAAG 
ATGTTGTCGA GTGTGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005156057.1
CDS	137..634
Translation	MTACIFLRGAKIDRELADDEIEELREAFNEFDKDKDGLISCKDLGNLMRTMGYMPTEMELIELGQNINMNLGGRVDFEDFVELMTPKLLAETAGMIGVKELRDAFKEFDMDGDGAITTEELRCAMTKLLGEHMNRREIDAVVREADNNGDGTVDFEEFVKMLSSV

Target ORF information:

RefSeq Version	XM_005156000.3
Organism	Danio rerio(zebrafish)
Definition	Danio rerio calcium binding protein 5a (cabp5a), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005156000.3

ORF Insert Sequence:

ATGACTGCAT GCATATTTCT ACGCGGAGCC AAAATTGACC GAGAGCTGGC GGATGATGAG 
ATTGAAGAGT TGCGTGAGGC CTTTAATGAG TTTGACAAAG ATAAGGATGG TCTGATCAGC 
TGTAAGGATC TGGGGAACCT GATGAGGACG ATGGGCTACA TGCCCACCGA GATGGAGCTG 
ATCGAGCTGG GCCAGAACAT CAACATGAAC CTGGGAGGCC GTGTGGACTT CGAGGACTTT 
GTGGAGCTCA TGACCCCGAA GCTTTTGGCA GAAACCGCAG GAATGATCGG CGTGAAGGAG 
CTCAGAGACG CTTTCAAAGA GTTTGATATG GACGGTGACG GTGCGATCAC CACTGAAGAA 
CTGCGCTGTG CGATGACGAA ATTACTGGGT GAACACATGA ACCGCAGAGA GATCGACGCC 
GTCGTCCGAG AGGCCGATAA TAACGGTGAC GGAACTGTAG ATTTTGAAGA ATTTGTGAAG 
ATGTTGTCGA GTGTGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Characterization of the calcium binding protein family in zebrafish.
PloS one8(1)e53299(2013)
Di Donato V,Auer TO,Duroure K,Del Bene F

Expressed sequence tag analysis of zebrafish eye tissues for NEIBank.
Molecular vision111083-100(2005 Dec)
Vihtelic TS,Fadool JM,Gao J,Thornton KA,Hyde DR,Wistow G

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cabp5a cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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