fam172a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	fam172a
Entrez Gene ID	393390
Full Name	family with sequence similarity 172, member A
Synonyms	si:dkey-172f14.1,zgc:64188
General protein information	Preferred Names family with sequence similarity 172, member A Names protein FAM172A
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_021476038.1	XP_021331713.1	protein FAM172A isoform X1
NM_200418.1	NP_956712.1	cotranscriptional regulator FAM172A homolog

Pathways from BioSystems

Homologies

Canis lupus familiaris (dog)	FAM172A	XP_005618172.1
Bos taurus (cattle)	FAM172A	XP_002689438.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP002541	XP_003436149.1
Xenopus tropicalis (tropical clawed frog)	fam172a	NP_001004971.1
Homo sapiens (human)	FAM172A	NP_114431.2
Mus musculus (house mouse)	Fam172a	NP_612185.1
Danio rerio (zebrafish)	fam172a	NP_956712.1
Gallus gallus (chicken)	FAM172A	NP_001006574.1
Drosophila melanogaster (fruit fly)	CG10038	NP_731685.1
	FAM172A	XP_001090460.2
Pan troglodytes (chimpanzee)	FAM172A	XP_003310704.1
Rattus norvegicus (Norway rat)	Fam172a	NP_001099871.1
Caenorhabditis elegans (roundworm)	CELE_Y75B8A.31	NP_499604.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes.
Ca?estro C, Catchen JM, Rodr?guez-Mar? A, Yokoi H, Postlethwait JH
PLoS genetics5(5)e1000496(2009 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following fam172a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the fam172a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa01127	NM_200418.1 Latest version!	Danio rerio family with sequence similarity 172 member A (fam172a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00
ODa142572	XM_021476038.1 Latest version!	Danio rerio family with sequence similarity 172, member A (fam172a), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$258.30 $369.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

fam172a ( NM_200418.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_956712.1 Danio rerio family with sequence similarity 172 member A (fam172a), mRNA.

Price & Availability↑

CloneID	ODa01127
Clone ID Related Accession (Same CDS sequence)	NM_200418.1
Accession Version	NM_200418.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1200bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-07-04
Organism	Danio rerio(zebrafish)
Product	cotranscriptional regulator FAM172A homolog
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC054635.1. ##Evidence-Data-START## Transcript exon combination :: BC054635.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGGCCCAGC TCTTAGCACA AGACGAAAAA GAAAAAACAA CTGCACTAAA AGATTTACTA 
TCCAGGATAG ATTTAGACGA GCTGATGAAA AAAGACGAGC CTCCGCTGGA CTTTCCTGAA 
ACTCTGGATG GCTTTGAATA CGCCTTCAAT GAGCAGGGCC AGTTAAGACA TACGAAAACT 
GGGGAGCCGT TTGTCTTTAA CTACAAGGAG GACCTGCACA GATGGAACCA AAAAAGATAT 
GAAGCGCTGG GAGAGATCAT TACAAAGTAT GTGTATGAAC GCTTAGAGAA AGACTGCAAT 
CTGAAGAAGG AGATCCTACC AGTTGATGCG ACTGAGGACG AACCCAAAAG CTTTATTTAT 
GTGAGCGAGG ACGCACTCAG TAACCCAGAC AAGATCATGG TTCTCATCCA GGGCAGTGGA 
GTGGTGAGGG CAGGCCAGTG GGCACGACGC CTCATCATTA ATGAAGACCT CAACAGTGGG 
ACTCAGATAC CCTTCATTAA CCGTGCCAAA GAGGAGGGCT ACGGGGTGAT TGTGCTGAAC 
CCCAACGAGA ACTCTCTGGA GGTGGAGAAG GTTTCAGATC CAGCCAAGAA AGCGTCCCCG 
GATGCCTCTG ATGAGCCGGC TGAAAAGAGA GAGAGGAAGG AGGAGCGGGA GAACAAGAAA 
AAGAAGGACT TCTATGAGAA GTATCGCAAC CCGCAGAAGG AAAGAGAGAT GGAGCACATC 
CCCATACGAG AAAATGGCAG TCCAGAAGAA CACACACTCT ATGCCTGGGA CTACTTCATC 
TCGAAATCAC TTGCCAAAAA CATCTTCATT GTGGCACACA GCTATGGCGG CTTGTCTTTC 
GTCAATTTGA TGATTAACCG AGAAGCAGAA GTGAAGAGTC GTGTTCGTGC AGTGGCCATG 
ACTGACTCTG TCCATAACGT CTGGCACCAG GAGGCCAGCA AGTCCATTCA GGACTGGCTC 
AGAGAGCACT GCTGTAACTG GGTGTCGAGC CCTGAGCCCC TGGATACTCT TGTGGACCCC 
ATGCTCAACG ACTGCCCTCG TGTTTCAGCA GGTACAGAGA AGCACGAGCT AACATCATGG 
AAAAGCTTCC AGTCCATCTT TAAGTTCTTC AGCAATGCCC TTAAAGACCA TGAGGACGAC 
TCCTCATCCA GTCCGGTCAC CACACGCAGC TCCCACCGAA TCAAACATGA AGACTTCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_956712.1
CDS	125..1324
Translation	MAQLLAQDEKEKTTALKDLLSRIDLDELMKKDEPPLDFPETLDGFEYAFNEQGQLRHTKTGEPFVFNYKEDLHRWNQKRYEALGEIITKYVYERLEKDCNLKKEILPVDATEDEPKSFIYVSEDALSNPDKIMVLIQGSGVVRAGQWARRLIINEDLNSGTQIPFINRAKEEGYGVIVLNPNENSLEVEKVSDPAKKASPDASDEPAEKRERKEERENKKKKDFYEKYRNPQKEREMEHIPIRENGSPEEHTLYAWDYFISKSLAKNIFIVAHSYGGLSFVNLMINREAEVKSRVRAVAMTDSVHNVWHQEASKSIQDWLREHCCNWVSSPEPLDTLVDPMLNDCPRVSAGTEKHELTSWKSFQSIFKFFSNALKDHEDDSSSSPVTTRSSHRIKHEDF

Target ORF information:

RefSeq Version	NM_200418.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio family with sequence similarity 172 member A (fam172a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_200418.1

ORF Insert Sequence:

ATGGCCCAGC TCTTAGCACA AGACGAAAAA GAAAAAACAA CTGCACTAAA AGATTTACTA 
TCCAGGATAG ATTTAGACGA GCTGATGAAA AAAGACGAGC CTCCGCTGGA CTTTCCTGAA 
ACTCTGGATG GCTTTGAATA CGCCTTCAAT GAGCAGGGCC AGTTAAGACA TACGAAAACT 
GGGGAGCCGT TTGTCTTTAA CTACAAGGAG GACCTGCACA GATGGAACCA AAAAAGATAT 
GAAGCGCTGG GAGAGATCAT TACAAAGTAT GTGTATGAAC GCTTAGAGAA AGACTGCAAT 
CTGAAGAAGG AGATCCTACC AGTTGATGCG ACTGAGGACG AACCCAAAAG CTTTATTTAT 
GTGAGCGAGG ACGCACTCAG TAACCCAGAC AAGATCATGG TTCTCATCCA GGGCAGTGGA 
GTGGTGAGGG CAGGCCAGTG GGCACGACGC CTCATCATTA ATGAAGACCT CAACAGTGGG 
ACTCAGATAC CCTTCATTAA CCGTGCCAAA GAGGAGGGCT ACGGGGTGAT TGTGCTGAAC 
CCCAACGAGA ACTCTCTGGA GGTGGAGAAG GTTTCAGATC CAGCCAAGAA AGCGTCCCCG 
GATGCCTCTG ATGAGCCGGC TGAAAAGAGA GAGAGGAAGG AGGAGCGGGA GAACAAGAAA 
AAGAAGGACT TCTATGAGAA GTATCGCAAC CCGCAGAAGG AAAGAGAGAT GGAGCACATC 
CCCATACGAG AAAATGGCAG TCCAGAAGAA CACACACTCT ATGCCTGGGA CTACTTCATC 
TCGAAATCAC TTGCCAAAAA CATCTTCATT GTGGCACACA GCTATGGCGG CTTGTCTTTC 
GTCAATTTGA TGATTAACCG AGAAGCAGAA GTGAAGAGTC GTGTTCGTGC AGTGGCCATG 
ACTGACTCTG TCCATAACGT CTGGCACCAG GAGGCCAGCA AGTCCATTCA GGACTGGCTC 
AGAGAGCACT GCTGTAACTG GGTGTCGAGC CCTGAGCCCC TGGATACTCT TGTGGACCCC 
ATGCTCAACG ACTGCCCTCG TGTTTCAGCA GGTACAGAGA AGCACGAGCT AACATCATGG 
AAAAGCTTCC AGTCCATCTT TAAGTTCTTC AGCAATGCCC TTAAAGACCA TGAGGACGAC 
TCCTCATCCA GTCCGGTCAC CACACGCAGC TCCCACCGAA TCAAACATGA AGACTTCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

fam172a ( XM_021476038.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_021331713.1 Danio rerio family with sequence similarity 172, member A (fam172a), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa142572
Clone ID Related Accession (Same CDS sequence)	XM_021476038.1
Accession Version	XM_021476038.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1248bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	protein FAM172A isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTTCTTCA GAGCCAGCTT CTTCCTCTTC TGTTTAGTTT GGATAACTAT GGCCCAACTC 
TTAGCACAAG ACGAAAAAGA AAAAACAACT GCACTAAAAG ATTTACTATC CAGGATAGAT 
TTAGACGAGC TGATGAAAAA AGACGAGCCT CCGCTGGACT TTCCTGAAAC TCTGGATGGC 
TTTGAATACG CCTTCAATGA GCAGGGCCAG TTAAGACATA CGAAAACTGG GGAGCCGTTT 
GTCTTTAACT ACAAGGAGGA CCTGCACAGA TGGAACCAAA AAAGATATGA AGCGCTGGGA 
GAGATCATTA CAAAGTATGT GTATGAACGC TTGGAGAAAG ACTGCAATCT GAAGAAGGAG 
ATCCTCCCAG TTGATGCGAC TGAGGACGAA CCCAAAAGCT TTATTTATGT GAGCGAGGAC 
GCACTCAGTA ACCCAGACAA GATCATGGTT CTCATCCAGG GCAGTGGAGT GGTGAGGGCA 
GGCCAGTGGG CACGACGCCT CATCATTAAT GAAGACCTCA ACAGTGGGAC TCAGATACCC 
TTCATTAACC GTGCCAAAGA GGAGGGCTAC GGGGTGATTG TGCTGAACCC CAACGAGAAC 
TCTCTGGAGG TGGAGAAGGT TTCAGATCCA GCCAAGAAAG CGTCCCCGGA TGCCTCTGAT 
GAGCCGGCTG AAAAGAGAGA GAGGAAGGAG GAGCGGGAGA ACAAGAAAAA GAAGGACTTC 
TATGAGAAGT ATCGCAACCC GCAGAAGGAA AGAGAGATGG AGCACATCCC CATACGAGAA 
AATGGCAGTC CAGAAGAACA CACACTCTAT GCCTGGGACT ACTTCATCTC GAAATCACTT 
GCCAAAAACA TCTTCATTGT GGCACACAGC TATGGCGGCT TGTCTTTCGT CAATTTGATG 
ATTAACCGAG AAGCAGAAGT GAAGAGTCGT GTTCGTGCAG TGGCCATGAC TGACTCTGTC 
CATAACGTCT GGCACCAGGA GGCCAGCAAG TCCATTCAGG ACTGGCTCAG AGAGCACTGC 
TGTAACTGGG TGTCGAGCCC TGAGCCCCTG GATACTCTTG TGGACCCCAT GCTCAACGAC 
TGCCCTCGTG TTTCAGCAGG TACAGAGAAG CACGAGCTAA CATCATGGAA AAGCTTCCAG 
TCCATCTTTA AGTTCTTCAG CAATGCCCTT AAAGACCATG AGGACGACTC CTCATCCAGT 
CCGGTCACCA CACGCAGCTC CCACCGAATC AAACATGAAG ACTTCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_021331713.1
CDS	165..1412
Translation	MFFRASFFLFCLVWITMAQLLAQDEKEKTTALKDLLSRIDLDELMKKDEPPLDFPETLDGFEYAFNEQGQLRHTKTGEPFVFNYKEDLHRWNQKRYEALGEIITKYVYERLEKDCNLKKEILPVDATEDEPKSFIYVSEDALSNPDKIMVLIQGSGVVRAGQWARRLIINEDLNSGTQIPFINRAKEEGYGVIVLNPNENSLEVEKVSDPAKKASPDASDEPAEKRERKEERENKKKKDFYEKYRNPQKEREMEHIPIRENGSPEEHTLYAWDYFISKSLAKNIFIVAHSYGGLSFVNLMINREAEVKSRVRAVAMTDSVHNVWHQEASKSIQDWLREHCCNWVSSPEPLDTLVDPMLNDCPRVSAGTEKHELTSWKSFQSIFKFFSNALKDHEDDSSSSPVTTRSSHRIKHEDF

Target ORF information:

RefSeq Version	XM_021476038.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio family with sequence similarity 172, member A (fam172a), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_021476038.1

ORF Insert Sequence:

ATGTTCTTCA GAGCCAGCTT CTTCCTCTTC TGTTTAGTTT GGATAACTAT GGCCCAACTC 
TTAGCACAAG ACGAAAAAGA AAAAACAACT GCACTAAAAG ATTTACTATC CAGGATAGAT 
TTAGACGAGC TGATGAAAAA AGACGAGCCT CCGCTGGACT TTCCTGAAAC TCTGGATGGC 
TTTGAATACG CCTTCAATGA GCAGGGCCAG TTAAGACATA CGAAAACTGG GGAGCCGTTT 
GTCTTTAACT ACAAGGAGGA CCTGCACAGA TGGAACCAAA AAAGATATGA AGCGCTGGGA 
GAGATCATTA CAAAGTATGT GTATGAACGC TTGGAGAAAG ACTGCAATCT GAAGAAGGAG 
ATCCTCCCAG TTGATGCGAC TGAGGACGAA CCCAAAAGCT TTATTTATGT GAGCGAGGAC 
GCACTCAGTA ACCCAGACAA GATCATGGTT CTCATCCAGG GCAGTGGAGT GGTGAGGGCA 
GGCCAGTGGG CACGACGCCT CATCATTAAT GAAGACCTCA ACAGTGGGAC TCAGATACCC 
TTCATTAACC GTGCCAAAGA GGAGGGCTAC GGGGTGATTG TGCTGAACCC CAACGAGAAC 
TCTCTGGAGG TGGAGAAGGT TTCAGATCCA GCCAAGAAAG CGTCCCCGGA TGCCTCTGAT 
GAGCCGGCTG AAAAGAGAGA GAGGAAGGAG GAGCGGGAGA ACAAGAAAAA GAAGGACTTC 
TATGAGAAGT ATCGCAACCC GCAGAAGGAA AGAGAGATGG AGCACATCCC CATACGAGAA 
AATGGCAGTC CAGAAGAACA CACACTCTAT GCCTGGGACT ACTTCATCTC GAAATCACTT 
GCCAAAAACA TCTTCATTGT GGCACACAGC TATGGCGGCT TGTCTTTCGT CAATTTGATG 
ATTAACCGAG AAGCAGAAGT GAAGAGTCGT GTTCGTGCAG TGGCCATGAC TGACTCTGTC 
CATAACGTCT GGCACCAGGA GGCCAGCAAG TCCATTCAGG ACTGGCTCAG AGAGCACTGC 
TGTAACTGGG TGTCGAGCCC TGAGCCCCTG GATACTCTTG TGGACCCCAT GCTCAACGAC 
TGCCCTCGTG TTTCAGCAGG TACAGAGAAG CACGAGCTAA CATCATGGAA AAGCTTCCAG 
TCCATCTTTA AGTTCTTCAG CAATGCCCTT AAAGACCATG AGGACGACTC CTCATCCAGT 
CCGGTCACCA CACGCAGCTC CCACCGAATC AAACATGAAG ACTTCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes.
PLoS genetics5(5)e1000496(2009 May)
Ca?estro C,Catchen JM,Rodr?guez-Mar? A,Yokoi H,Postlethwait JH