calcoco1a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	calcoco1a
Entrez Gene ID	334971
Full Name	calcium binding and coiled-coil domain 1a
Synonyms	calcoco1,fa11a10,wu:fa11a10
General protein information	Preferred Names calcium binding and coiled-coil domain 1a Names calcium-binding and coiled-coil domain-containing protein 1 calcium binding and coiled-coil domain 1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_009297039.2	XP_009295314.1	calcium-binding and coiled-coil domain-containing protein 1 isoform X1
XM_009297039.3	XP_009295314.1	calcium-binding and coiled-coil domain-containing protein 1 isoform X1
NM_001110166.1	NP_001103636.1	calcium-binding and coiled-coil domain-containing protein 1

Pathways from BioSystems

Homologies

	CALCOCO1	XP_001107444.2
Canis lupus familiaris (dog)	CALCOCO1	XP_543631.2
Bos taurus (cattle)	CALCOCO1	NP_001039900.1
Danio rerio (zebrafish)	tceb3	NP_956415.1
Mus musculus (house mouse)	Calcoco1	NP_080468.1
Danio rerio (zebrafish)	calcoco1a	NP_001103636.1
Xenopus tropicalis (tropical clawed frog)	LOC100493024	XP_004911994.1
Homo sapiens (human)	CALCOCO1	NP_065949.1
Pan troglodytes (chimpanzee)	CALCOCO1	XP_509103.3
Rattus norvegicus (Norway rat)	Calcoco1	NP_631929.1
Rattus norvegicus (Norway rat)	LOC100912282	XP_003750466.1

Gene Ontology
Bibliography

Related articles in PubMed

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern.
Potok ME, Nix DA, Parnell TJ, Cairns BR
Cell153(4)759-72(2013 May)

The zebrafish gene map defines ancestral vertebrate chromosomes.
Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH, Talbot WS
Genome research15(9)1307-14(2005 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following calcoco1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the calcoco1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa00097	NM_001110166.1 Latest version!	Danio rerio calcium binding and coiled-coil domain 1a (calcoco1a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$342.30 $489.00
ODa27978	XM_009297039.3 Latest version!	Danio rerio calcium binding and coiled-coil domain 1a (calcoco1a), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$342.30 $489.00
View Old Accession Versions >>
ODa27978	XM_009297039.2	Danio rerio calcium binding and coiled-coil domain 1a (calcoco1a), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$342.30 $489.00
Hide Old Accession Versions >>

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

calcoco1a ( NM_001110166.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001103636.1 Danio rerio calcium binding and coiled-coil domain 1a (calcoco1a), mRNA.

Price & Availability↑

CloneID	ODa00097
Clone ID Related Accession (Same CDS sequence)	NM_001110166.1
Accession Version	NM_001110166.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1923bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	calcium-binding and coiled-coil domain-containing protein 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BX465864.12. On Oct 28, 2007 this sequence version replaced XM_685375.2. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMEA3505377, SAMEA3505386 [ECO:0000350] ##Evidence-Data-END##

ATGGAGAAGA CATGGAGGGT GGAGTTTCGT AATGTTGGAA GTTGCTACTT TCCACAGAGC 
AGAGTGGACT GTCACTACAC CATCAACCCA CAGCACACAT GGGCCAGTAA TGACTGGATT 
GGATTATTTA AGGTTGGCTG GTCATCAGTC AAGGAGTACC ATACATTTGT TTGGGCAGTA 
GCTCCATCCA GCTACAAAGA AGGGACCTCT GTCAACTGCT GTGTTAATTT CCAAGCTTCT 
TACCTACCAG GGCCTAGTGC TCAGCAGTAC CAGTTTGTGT ATGTGGATGG AAAGGGAGAG 
ATTTGTTCTT GCAGCGCTGC CTTTACCTTC TCAGCACCAA AGCCCCTGGA AGAGCTGGTG 
ACCCTGGAGG AGGAGGGTCA AGGAGAGGAA GTGGGCGAGG ACATGTTGCT GGTCATCCCT 
AGAGCTCAGC TACTGCAGAG TCGTCTTCAG GAGTGTTTAA AGGAGCGTGC AGAGCTGCTC 
CAGGCTCTAG AAGCTGCAGA CCAGAACGTG GAGAGGGAGA AAGGCAGAAG GGAGAGAGAC 
AGAGGGTCCT GGGAACACAC ACGCAAGGAG CTTGAAAGGA AGATCGACGA TCTGAAGGAG 
GAAGTGAGAG AATATAGAGA GAAAGTGGAG GACATGAAGA AGAAGCAGAA GGAAGTTGAG 
GATTTAGGCG AGGCCCTGAC AGAGGAGAAA AGAGCCCTGC TTGCTCAAAA AGAAGCGAAT 
GAGCAGCGAA TCAGAGAGCT TGAGGAGGAC ATCAAAATAC TGACCCAGAG GGGCTTGGAG 
AGAGAGACTG ACTTAGAAAG GATGAGGGAA AGGGCTAAAA AATCAGCAGC TCAGAAGAGG 
GAGGATGAAG ATGAACACAA GAACCTGAAG TTAAAGATGG AGCAGACAGA GAAAGAGCTG 
CACAGTCTGT CAGCAGAGTT CCAGAGTCTG AGAAGCTCAT TGGCCCAGAG AGACACACAC 
GCCCTGCAGC TTAGAGACAC CATCACCACC CTCACACACA AACTCAACAG CGCTCACAGG 
AAGGAGGCAG CCAATGAATT GGCTTTGAAT GAACTCCGAA GTGTTCAGGA GCGTCTGAAT 
GTTAGTGAAC ACTGTGTGGA GACTCTGAGG GGAGAGCTGA GAGACATGGT TGCTCAGAGA 
GACAGTGCAC ATGCTGAGCT CCATCAGGCC CGTCTGCAGG CCGCACAGCT CACACTTCAG 
TTAGCAGATG CCAGTCTGGC TCTGAGAGAA GGCAGGGCCA ACTGGGCACA GGAGAGAGAG 
ACACTGCAGC AGAATGCTGA GATTGACAAA GTGCGTCTGG AACGCCAAAA TGATGAGATC 
CAGCAGAAGG AGGAGATGTT GCAGAAGGCA AGGATGGAGA GAGAGAAAGC AGTGGTGGAG 
CTGGGAAGAG AGAAAGATTG CAATCGGGAG CTAAAGGCAA GTCTCAGGGT GGCTCAGAAA 
GAAAAGGAAC AGCTGCAAAC AGAAATACAG GAAGTGATGG AGTACAGCCG TCAGCTGGAG 
AGAAGGCTGG AGGTGCTGAG CGATTGTAAA TGGAGTGAGA CGGCCCTGCT GCAGAGCAGT 
CGTGCTGAAA GCCCACTGCT GTCTGATTCT GAGGATGAGA ACCCGGAGGC CTTGCAGGAC 
ACACACTCTT CTGGGCCTCT GAATCACTAT AGTCTGTGTG AGCAGCCCCA GTCTGACCTG 
CTGCTCCCAG CCACCCCACC ACCCTCTCCC AGACATCCCT CCACAGTGGT CATCAGCCAG 
CCTGCACCCC TTTCATCTCC ACACCAACCC AGTGCTCGCT CACACACTCA CAGCTCTGAG 
TCGGAGGAAG AGTATGAGGC CGCTTTGTCA GGCGGGCACA GCTCTGGAGA GGAGACAGCT 
CTTCTCCTGC CTGACAACAG AGACACTACC CTCGGAGAGC TGGCTGAGAG CCCCCTGTGG 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001103636.1
CDS	196..2118
Translation	MEKTWRVEFRNVGSCYFPQSRVDCHYTINPQHTWASNDWIGLFKVGWSSVKEYHTFVWAVAPSSYKEGTSVNCCVNFQASYLPGPSAQQYQFVYVDGKGEICSCSAAFTFSAPKPLEELVTLEEEGQGEEVGEDMLLVIPRAQLLQSRLQECLKERAELLQALEAADQNVEREKGRRERDRGSWEHTRKELERKIDDLKEEVREYREKVEDMKKKQKEVEDLGEALTEEKRALLAQKEANEQRIRELEEDIKILTQRGLERETDLERMRERAKKSAAQKREDEDEHKNLKLKMEQTEKELHSLSAEFQSLRSSLAQRDTHALQLRDTITTLTHKLNSAHRKEAANELALNELRSVQERLNVSEHCVETLRGELRDMVAQRDSAHAELHQARLQAAQLTLQLADASLALREGRANWAQERETLQQNAEIDKVRLERQNDEIQQKEEMLQKARMEREKAVVELGREKDCNRELKASLRVAQKEKEQLQTEIQEVMEYSRQLERRLEVLSDCKWSETALLQSSRAESPLLSDSEDENPEALQDTHSSGPLNHYSLCEQPQSDLLLPATPPPSPRHPSTVVISQPAPLSSPHQPSARSHTHSSESEEEYEAALSGGHSSGEETALLLPDNRDTTLGELAESPLW

Target ORF information:

RefSeq Version	NM_001110166.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio calcium binding and coiled-coil domain 1a (calcoco1a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001110166.1

ORF Insert Sequence:

ATGGAGAAGA CATGGAGGGT GGAGTTTCGT AATGTTGGAA GTTGCTACTT TCCACAGAGC 
AGAGTGGACT GTCACTACAC CATCAACCCA CAGCACACAT GGGCCAGTAA TGACTGGATT 
GGATTATTTA AGGTTGGCTG GTCATCAGTC AAGGAGTACC ATACATTTGT TTGGGCAGTA 
GCTCCATCCA GCTACAAAGA AGGGACCTCT GTCAACTGCT GTGTTAATTT CCAAGCTTCT 
TACCTACCAG GGCCTAGTGC TCAGCAGTAC CAGTTTGTGT ATGTGGATGG AAAGGGAGAG 
ATTTGTTCTT GCAGCGCTGC CTTTACCTTC TCAGCACCAA AGCCCCTGGA AGAGCTGGTG 
ACCCTGGAGG AGGAGGGTCA AGGAGAGGAA GTGGGCGAGG ACATGTTGCT GGTCATCCCT 
AGAGCTCAGC TACTGCAGAG TCGTCTTCAG GAGTGTTTAA AGGAGCGTGC AGAGCTGCTC 
CAGGCTCTAG AAGCTGCAGA CCAGAACGTG GAGAGGGAGA AAGGCAGAAG GGAGAGAGAC 
AGAGGGTCCT GGGAACACAC ACGCAAGGAG CTTGAAAGGA AGATCGACGA TCTGAAGGAG 
GAAGTGAGAG AATATAGAGA GAAAGTGGAG GACATGAAGA AGAAGCAGAA GGAAGTTGAG 
GATTTAGGCG AGGCCCTGAC AGAGGAGAAA AGAGCCCTGC TTGCTCAAAA AGAAGCGAAT 
GAGCAGCGAA TCAGAGAGCT TGAGGAGGAC ATCAAAATAC TGACCCAGAG GGGCTTGGAG 
AGAGAGACTG ACTTAGAAAG GATGAGGGAA AGGGCTAAAA AATCAGCAGC TCAGAAGAGG 
GAGGATGAAG ATGAACACAA GAACCTGAAG TTAAAGATGG AGCAGACAGA GAAAGAGCTG 
CACAGTCTGT CAGCAGAGTT CCAGAGTCTG AGAAGCTCAT TGGCCCAGAG AGACACACAC 
GCCCTGCAGC TTAGAGACAC CATCACCACC CTCACACACA AACTCAACAG CGCTCACAGG 
AAGGAGGCAG CCAATGAATT GGCTTTGAAT GAACTCCGAA GTGTTCAGGA GCGTCTGAAT 
GTTAGTGAAC ACTGTGTGGA GACTCTGAGG GGAGAGCTGA GAGACATGGT TGCTCAGAGA 
GACAGTGCAC ATGCTGAGCT CCATCAGGCC CGTCTGCAGG CCGCACAGCT CACACTTCAG 
TTAGCAGATG CCAGTCTGGC TCTGAGAGAA GGCAGGGCCA ACTGGGCACA GGAGAGAGAG 
ACACTGCAGC AGAATGCTGA GATTGACAAA GTGCGTCTGG AACGCCAAAA TGATGAGATC 
CAGCAGAAGG AGGAGATGTT GCAGAAGGCA AGGATGGAGA GAGAGAAAGC AGTGGTGGAG 
CTGGGAAGAG AGAAAGATTG CAATCGGGAG CTAAAGGCAA GTCTCAGGGT GGCTCAGAAA 
GAAAAGGAAC AGCTGCAAAC AGAAATACAG GAAGTGATGG AGTACAGCCG TCAGCTGGAG 
AGAAGGCTGG AGGTGCTGAG CGATTGTAAA TGGAGTGAGA CGGCCCTGCT GCAGAGCAGT 
CGTGCTGAAA GCCCACTGCT GTCTGATTCT GAGGATGAGA ACCCGGAGGC CTTGCAGGAC 
ACACACTCTT CTGGGCCTCT GAATCACTAT AGTCTGTGTG AGCAGCCCCA GTCTGACCTG 
CTGCTCCCAG CCACCCCACC ACCCTCTCCC AGACATCCCT CCACAGTGGT CATCAGCCAG 
CCTGCACCCC TTTCATCTCC ACACCAACCC AGTGCTCGCT CACACACTCA CAGCTCTGAG 
TCGGAGGAAG AGTATGAGGC CGCTTTGTCA GGCGGGCACA GCTCTGGAGA GGAGACAGCT 
CTTCTCCTGC CTGACAACAG AGACACTACC CTCGGAGAGC TGGCTGAGAG CCCCCTGTGG 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

calcoco1a ( XM_009297039.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_009295314.1 Danio rerio calcium binding and coiled-coil domain 1a (calcoco1a), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa27978
Clone ID Related Accession (Same CDS sequence)	XM_009297039.2 , XM_009297039.3
Accession Version	XM_009297039.2	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1956bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	calcium-binding and coiled-coil domain-containing protein 1 isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007134.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009297039.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGAGAAGA CATGGAGGGT GGAGTTTCGT AATGTTGGAA GTTGCTACTT TCCACAGAGC 
AGAGTGGACT GTCACTACAC CATCAACCCA CAGCACACAT GGGCCAGTAA TGACTGGATT 
GGATTATTTA AGGTTGGCTG GTCATCAGTC AAGGAGTACC ATACATTTGT TTGGGCAGTA 
GCTCCATCCA GCTACAAAGA AGGGACCTCT GTCAACTGCT GTGTTAATTT CCAAGCTTCT 
TACCTACCAG GGCCTAGTGC TCAGCAGTAC CAGTTTGTGT ATGTGGATGG AAAGGGAGAG 
ATTTGTTCTT GCAGCGCTGC CTTTACCTTC TCAGCACCAA AGCCCCTGGA AGAGCTGGTG 
ACCCTGGAGG AGGAGGGTCA AGGAGAGGAA GTGGGCGAGG ACATGTTGCT GGTCATCCCT 
AGAGCTCAGC TACTGCAGAG TCGTCTTCAG GAGTGTTTAA AGGAGCGTGC AGAGCTGCTC 
CAGGCTCTAG AAGCTGCAGA CCAGAACGTG GAGAGGGAGA AAGGCAGAAG GGAGAGAGAC 
AGAGGGTCCT GGGAACACAC ACGCAAGGAG CTTGAAAGGA AGATCGACGA TCTGAAGGAG 
GAAGTGAGAG AATATAGAGA GAAAGTGGAG GACATGAAGA AGAAGCAGAA GGAAGTTGAG 
GATTTAGGCG AGGCCCTGAC AGAGGAGAAA AGAGCCCTGC TTGCTCAAAA AGAAGCGAAT 
GAGCAGCGAA TCAGAGAGCT TGAGGAGGAC ATCAAAATAC TGACCCAGAG GGGCTTGGAG 
AGAGAGACTG ACTTAGAAAG GATGAGGGAA AGGGCTAAAA AATCAGCAGC TCAGAAGAGG 
GAGGATGAAG ATGAACACAA GAACCTGAAG TTAAAGATGG AGCAGACAGA GAAAGAGCTG 
CACAGTCTGT CAGCAGAGTT CCAGAGTCTG AGAAGCTCAT TGGCCCAGAG AGACACACAC 
GCCCTGCAGC TTAGAGACAC CATCACCACC CTCACACACA AACTCAACAG CGCTCACAGG 
AAGGAGGCAG CCAATGAATT GGCTTTGAAT GAACTCCGAA GTGTTCAGGA GCGTCTGAAT 
GTTAGTGAAC ACTGTGTGGA GACTCTGAGG GGAGAGCTGA GAGACATGGT TGCTCAGAGA 
GACAGTGCAC ATGCTGAGCT CCATCAGGCC CGTCTGCAGG CCGCACAGCT CACACTTCAG 
TTAGCAGATG CCAGTCTGGC TCTGAGAGAA GGCAGGGCCA ACTGGGCACA GGAGAGAGAG 
ACACTGCAGC AGAATGCTGA GATTGACAAA GTGCGTCTGG AACGCCAAAA TGATGAGATC 
CAGCAGAAGG AGGAGATGTT GCAGAAGGCA AGGATGGAGA GAGAGAAAGC AGTGGTGGAG 
CTGGGAAGAG AGAAAGATTG CAATCGGGTT CAGCTAAGTG AGACTCGGCG TGAGCTTCAG 
GAGCTAAAGG CAAGTCTCAG GGTGGCTCAG AAAGAAAAGG AACAGCTGCA AACAGAAATA 
CAGGAAGTGA TGGAGTACAG CCGTCAGCTG GAGAGAAGGC TGGAGGTGCT GAGCGATTGT 
AAATGGAGTG AGACGGCCCT GCTGCAGAGC AGTCGTGCTG AAAGCCCACT GCTGTCTGAT 
TCTGAGGATG AGAACCCGGA GGCCTTGCAG GACACACACT CTTCTGGGCC TCTGAATCAC 
TATAGTCTGT GTGAGCAGCC CCAGTCTGAC CTGCTGCTCC CAGCCACCCC ACCACCCTCT 
CCCAGACATC CCTCCACAGT GGTCATCAGC CAGCCTGCAC CCCTTTCATC TCCACACCAA 
CCCAGTGCTC GCTCACACAC TCACAGCTCT GAGTCGGAGG AAGAGTATGA GGCCGCTTTG 
TCAGGCGGGC ACAGCTCTGG AGAGGAGACA GCTCTTCTCC TGCCTGACAA CAGAGACACT 
ACCCTCGGAG AGCTGGCTGA GAGCCCCCTG TGGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_009295314.1
CDS	223..2178
Translation	MEKTWRVEFRNVGSCYFPQSRVDCHYTINPQHTWASNDWIGLFKVGWSSVKEYHTFVWAVAPSSYKEGTSVNCCVNFQASYLPGPSAQQYQFVYVDGKGEICSCSAAFTFSAPKPLEELVTLEEEGQGEEVGEDMLLVIPRAQLLQSRLQECLKERAELLQALEAADQNVEREKGRRERDRGSWEHTRKELERKIDDLKEEVREYREKVEDMKKKQKEVEDLGEALTEEKRALLAQKEANEQRIRELEEDIKILTQRGLERETDLERMRERAKKSAAQKREDEDEHKNLKLKMEQTEKELHSLSAEFQSLRSSLAQRDTHALQLRDTITTLTHKLNSAHRKEAANELALNELRSVQERLNVSEHCVETLRGELRDMVAQRDSAHAELHQARLQAAQLTLQLADASLALREGRANWAQERETLQQNAEIDKVRLERQNDEIQQKEEMLQKARMEREKAVVELGREKDCNRVQLSETRRELQELKASLRVAQKEKEQLQTEIQEVMEYSRQLERRLEVLSDCKWSETALLQSSRAESPLLSDSEDENPEALQDTHSSGPLNHYSLCEQPQSDLLLPATPPPSPRHPSTVVISQPAPLSSPHQPSARSHTHSSESEEEYEAALSGGHSSGEETALLLPDNRDTTLGELAESPLW

Target ORF information:

RefSeq Version	XM_009297039.2
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio calcium binding and coiled-coil domain 1a (calcoco1a), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_009297039.2

ORF Insert Sequence:

ATGGAGAAGA CATGGAGGGT GGAGTTTCGT AATGTTGGAA GTTGCTACTT TCCACAGAGC 
AGAGTGGACT GTCACTACAC CATCAACCCA CAGCACACAT GGGCCAGTAA TGACTGGATT 
GGATTATTTA AGGTTGGCTG GTCATCAGTC AAGGAGTACC ATACATTTGT TTGGGCAGTA 
GCTCCATCCA GCTACAAAGA AGGGACCTCT GTCAACTGCT GTGTTAATTT CCAAGCTTCT 
TACCTACCAG GGCCTAGTGC TCAGCAGTAC CAGTTTGTGT ATGTGGATGG AAAGGGAGAG 
ATTTGTTCTT GCAGCGCTGC CTTTACCTTC TCAGCACCAA AGCCCCTGGA AGAGCTGGTG 
ACCCTGGAGG AGGAGGGTCA AGGAGAGGAA GTGGGCGAGG ACATGTTGCT GGTCATCCCT 
AGAGCTCAGC TACTGCAGAG TCGTCTTCAG GAGTGTTTAA AGGAGCGTGC AGAGCTGCTC 
CAGGCTCTAG AAGCTGCAGA CCAGAACGTG GAGAGGGAGA AAGGCAGAAG GGAGAGAGAC 
AGAGGGTCCT GGGAACACAC ACGCAAGGAG CTTGAAAGGA AGATCGACGA TCTGAAGGAG 
GAAGTGAGAG AATATAGAGA GAAAGTGGAG GACATGAAGA AGAAGCAGAA GGAAGTTGAG 
GATTTAGGCG AGGCCCTGAC AGAGGAGAAA AGAGCCCTGC TTGCTCAAAA AGAAGCGAAT 
GAGCAGCGAA TCAGAGAGCT TGAGGAGGAC ATCAAAATAC TGACCCAGAG GGGCTTGGAG 
AGAGAGACTG ACTTAGAAAG GATGAGGGAA AGGGCTAAAA AATCAGCAGC TCAGAAGAGG 
GAGGATGAAG ATGAACACAA GAACCTGAAG TTAAAGATGG AGCAGACAGA GAAAGAGCTG 
CACAGTCTGT CAGCAGAGTT CCAGAGTCTG AGAAGCTCAT TGGCCCAGAG AGACACACAC 
GCCCTGCAGC TTAGAGACAC CATCACCACC CTCACACACA AACTCAACAG CGCTCACAGG 
AAGGAGGCAG CCAATGAATT GGCTTTGAAT GAACTCCGAA GTGTTCAGGA GCGTCTGAAT 
GTTAGTGAAC ACTGTGTGGA GACTCTGAGG GGAGAGCTGA GAGACATGGT TGCTCAGAGA 
GACAGTGCAC ATGCTGAGCT CCATCAGGCC CGTCTGCAGG CCGCACAGCT CACACTTCAG 
TTAGCAGATG CCAGTCTGGC TCTGAGAGAA GGCAGGGCCA ACTGGGCACA GGAGAGAGAG 
ACACTGCAGC AGAATGCTGA GATTGACAAA GTGCGTCTGG AACGCCAAAA TGATGAGATC 
CAGCAGAAGG AGGAGATGTT GCAGAAGGCA AGGATGGAGA GAGAGAAAGC AGTGGTGGAG 
CTGGGAAGAG AGAAAGATTG CAATCGGGTT CAGCTAAGTG AGACTCGGCG TGAGCTTCAG 
GAGCTAAAGG CAAGTCTCAG GGTGGCTCAG AAAGAAAAGG AACAGCTGCA AACAGAAATA 
CAGGAAGTGA TGGAGTACAG CCGTCAGCTG GAGAGAAGGC TGGAGGTGCT GAGCGATTGT 
AAATGGAGTG AGACGGCCCT GCTGCAGAGC AGTCGTGCTG AAAGCCCACT GCTGTCTGAT 
TCTGAGGATG AGAACCCGGA GGCCTTGCAG GACACACACT CTTCTGGGCC TCTGAATCAC 
TATAGTCTGT GTGAGCAGCC CCAGTCTGAC CTGCTGCTCC CAGCCACCCC ACCACCCTCT 
CCCAGACATC CCTCCACAGT GGTCATCAGC CAGCCTGCAC CCCTTTCATC TCCACACCAA 
CCCAGTGCTC GCTCACACAC TCACAGCTCT GAGTCGGAGG AAGAGTATGA GGCCGCTTTG 
TCAGGCGGGC ACAGCTCTGG AGAGGAGACA GCTCTTCTCC TGCCTGACAA CAGAGACACT 
ACCCTCGGAG AGCTGGCTGA GAGCCCCCTG TGGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

calcoco1a ( XM_009297039.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_009295314.1 Danio rerio calcium binding and coiled-coil domain 1a (calcoco1a), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa27978
Clone ID Related Accession (Same CDS sequence)	XM_009297039.2 , XM_009297039.3
Accession Version	XM_009297039.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1956bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	calcium-binding and coiled-coil domain-containing protein 1 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007134.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_009297039.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGAGAAGA CATGGAGGGT GGAGTTTCGT AATGTTGGAA GTTGCTACTT TCCACAGAGC 
AGAGTGGACT GTCACTACAC CATCAACCCA CAGCACACAT GGGCCAGTAA TGACTGGATT 
GGATTATTTA AGGTTGGCTG GTCATCAGTC AAGGAGTACC ATACATTTGT TTGGGCAGTA 
GCTCCATCCA GCTACAAAGA AGGGACCTCT GTCAACTGCT GTGTTAATTT CCAAGCTTCT 
TACCTACCAG GGCCTAGTGC TCAGCAGTAC CAGTTTGTGT ATGTGGATGG AAAGGGAGAG 
ATTTGTTCTT GCAGCGCTGC CTTTACCTTC TCAGCACCAA AGCCCCTGGA AGAGCTGGTG 
ACCCTGGAGG AGGAGGGTCA AGGAGAGGAA GTGGGCGAGG ACATGTTGCT GGTCATCCCT 
AGAGCTCAGC TACTGCAGAG TCGTCTTCAG GAGTGTTTAA AGGAGCGTGC AGAGCTGCTC 
CAGGCTCTAG AAGCTGCAGA CCAGAACGTG GAGAGGGAGA AAGGCAGAAG GGAGAGAGAC 
AGAGGGTCCT GGGAACACAC ACGCAAGGAG CTTGAAAGGA AGATCGACGA TCTGAAGGAG 
GAAGTGAGAG AATATAGAGA GAAAGTGGAG GACATGAAGA AGAAGCAGAA GGAAGTTGAG 
GATTTAGGCG AGGCCCTGAC AGAGGAGAAA AGAGCCCTGC TTGCTCAAAA AGAAGCGAAT 
GAGCAGCGAA TCAGAGAGCT TGAGGAGGAC ATCAAAATAC TGACCCAGAG GGGCTTGGAG 
AGAGAGACTG ACTTAGAAAG GATGAGGGAA AGGGCTAAAA AATCAGCAGC TCAGAAGAGG 
GAGGATGAAG ATGAACACAA GAACCTGAAG TTAAAGATGG AGCAGACAGA GAAAGAGCTG 
CACAGTCTGT CAGCAGAGTT CCAGAGTCTG AGAAGCTCAT TGGCCCAGAG AGACACACAC 
GCCCTGCAGC TTAGAGACAC CATCACCACC CTCACACACA AACTCAACAG CGCTCACAGG 
AAGGAGGCAG CCAATGAATT GGCTTTGAAT GAACTCCGAA GTGTTCAGGA GCGTCTGAAT 
GTTAGTGAAC ACTGTGTGGA GACTCTGAGG GGAGAGCTGA GAGACATGGT TGCTCAGAGA 
GACAGTGCAC ATGCTGAGCT CCATCAGGCC CGTCTGCAGG CCGCACAGCT CACACTTCAG 
TTAGCAGATG CCAGTCTGGC TCTGAGAGAA GGCAGGGCCA ACTGGGCACA GGAGAGAGAG 
ACACTGCAGC AGAATGCTGA GATTGACAAA GTGCGTCTGG AACGCCAAAA TGATGAGATC 
CAGCAGAAGG AGGAGATGTT GCAGAAGGCA AGGATGGAGA GAGAGAAAGC AGTGGTGGAG 
CTGGGAAGAG AGAAAGATTG CAATCGGGTT CAGCTAAGTG AGACTCGGCG TGAGCTTCAG 
GAGCTAAAGG CAAGTCTCAG GGTGGCTCAG AAAGAAAAGG AACAGCTGCA AACAGAAATA 
CAGGAAGTGA TGGAGTACAG CCGTCAGCTG GAGAGAAGGC TGGAGGTGCT GAGCGATTGT 
AAATGGAGTG AGACGGCCCT GCTGCAGAGC AGTCGTGCTG AAAGCCCACT GCTGTCTGAT 
TCTGAGGATG AGAACCCGGA GGCCTTGCAG GACACACACT CTTCTGGGCC TCTGAATCAC 
TATAGTCTGT GTGAGCAGCC CCAGTCTGAC CTGCTGCTCC CAGCCACCCC ACCACCCTCT 
CCCAGACATC CCTCCACAGT GGTCATCAGC CAGCCTGCAC CCCTTTCATC TCCACACCAA 
CCCAGTGCTC GCTCACACAC TCACAGCTCT GAGTCGGAGG AAGAGTATGA GGCCGCTTTG 
TCAGGCGGGC ACAGCTCTGG AGAGGAGACA GCTCTTCTCC TGCCTGACAA CAGAGACACT 
ACCCTCGGAG AGCTGGCTGA GAGCCCCCTG TGGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_009295314.1
CDS	231..2186
Translation	MEKTWRVEFRNVGSCYFPQSRVDCHYTINPQHTWASNDWIGLFKVGWSSVKEYHTFVWAVAPSSYKEGTSVNCCVNFQASYLPGPSAQQYQFVYVDGKGEICSCSAAFTFSAPKPLEELVTLEEEGQGEEVGEDMLLVIPRAQLLQSRLQECLKERAELLQALEAADQNVEREKGRRERDRGSWEHTRKELERKIDDLKEEVREYREKVEDMKKKQKEVEDLGEALTEEKRALLAQKEANEQRIRELEEDIKILTQRGLERETDLERMRERAKKSAAQKREDEDEHKNLKLKMEQTEKELHSLSAEFQSLRSSLAQRDTHALQLRDTITTLTHKLNSAHRKEAANELALNELRSVQERLNVSEHCVETLRGELRDMVAQRDSAHAELHQARLQAAQLTLQLADASLALREGRANWAQERETLQQNAEIDKVRLERQNDEIQQKEEMLQKARMEREKAVVELGREKDCNRVQLSETRRELQELKASLRVAQKEKEQLQTEIQEVMEYSRQLERRLEVLSDCKWSETALLQSSRAESPLLSDSEDENPEALQDTHSSGPLNHYSLCEQPQSDLLLPATPPPSPRHPSTVVISQPAPLSSPHQPSARSHTHSSESEEEYEAALSGGHSSGEETALLLPDNRDTTLGELAESPLW

Target ORF information:

RefSeq Version	XM_009297039.3
Organism	Danio rerio(zebrafish)
Definition	Danio rerio calcium binding and coiled-coil domain 1a (calcoco1a), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_009297039.3

ORF Insert Sequence:

ATGGAGAAGA CATGGAGGGT GGAGTTTCGT AATGTTGGAA GTTGCTACTT TCCACAGAGC 
AGAGTGGACT GTCACTACAC CATCAACCCA CAGCACACAT GGGCCAGTAA TGACTGGATT 
GGATTATTTA AGGTTGGCTG GTCATCAGTC AAGGAGTACC ATACATTTGT TTGGGCAGTA 
GCTCCATCCA GCTACAAAGA AGGGACCTCT GTCAACTGCT GTGTTAATTT CCAAGCTTCT 
TACCTACCAG GGCCTAGTGC TCAGCAGTAC CAGTTTGTGT ATGTGGATGG AAAGGGAGAG 
ATTTGTTCTT GCAGCGCTGC CTTTACCTTC TCAGCACCAA AGCCCCTGGA AGAGCTGGTG 
ACCCTGGAGG AGGAGGGTCA AGGAGAGGAA GTGGGCGAGG ACATGTTGCT GGTCATCCCT 
AGAGCTCAGC TACTGCAGAG TCGTCTTCAG GAGTGTTTAA AGGAGCGTGC AGAGCTGCTC 
CAGGCTCTAG AAGCTGCAGA CCAGAACGTG GAGAGGGAGA AAGGCAGAAG GGAGAGAGAC 
AGAGGGTCCT GGGAACACAC ACGCAAGGAG CTTGAAAGGA AGATCGACGA TCTGAAGGAG 
GAAGTGAGAG AATATAGAGA GAAAGTGGAG GACATGAAGA AGAAGCAGAA GGAAGTTGAG 
GATTTAGGCG AGGCCCTGAC AGAGGAGAAA AGAGCCCTGC TTGCTCAAAA AGAAGCGAAT 
GAGCAGCGAA TCAGAGAGCT TGAGGAGGAC ATCAAAATAC TGACCCAGAG GGGCTTGGAG 
AGAGAGACTG ACTTAGAAAG GATGAGGGAA AGGGCTAAAA AATCAGCAGC TCAGAAGAGG 
GAGGATGAAG ATGAACACAA GAACCTGAAG TTAAAGATGG AGCAGACAGA GAAAGAGCTG 
CACAGTCTGT CAGCAGAGTT CCAGAGTCTG AGAAGCTCAT TGGCCCAGAG AGACACACAC 
GCCCTGCAGC TTAGAGACAC CATCACCACC CTCACACACA AACTCAACAG CGCTCACAGG 
AAGGAGGCAG CCAATGAATT GGCTTTGAAT GAACTCCGAA GTGTTCAGGA GCGTCTGAAT 
GTTAGTGAAC ACTGTGTGGA GACTCTGAGG GGAGAGCTGA GAGACATGGT TGCTCAGAGA 
GACAGTGCAC ATGCTGAGCT CCATCAGGCC CGTCTGCAGG CCGCACAGCT CACACTTCAG 
TTAGCAGATG CCAGTCTGGC TCTGAGAGAA GGCAGGGCCA ACTGGGCACA GGAGAGAGAG 
ACACTGCAGC AGAATGCTGA GATTGACAAA GTGCGTCTGG AACGCCAAAA TGATGAGATC 
CAGCAGAAGG AGGAGATGTT GCAGAAGGCA AGGATGGAGA GAGAGAAAGC AGTGGTGGAG 
CTGGGAAGAG AGAAAGATTG CAATCGGGTT CAGCTAAGTG AGACTCGGCG TGAGCTTCAG 
GAGCTAAAGG CAAGTCTCAG GGTGGCTCAG AAAGAAAAGG AACAGCTGCA AACAGAAATA 
CAGGAAGTGA TGGAGTACAG CCGTCAGCTG GAGAGAAGGC TGGAGGTGCT GAGCGATTGT 
AAATGGAGTG AGACGGCCCT GCTGCAGAGC AGTCGTGCTG AAAGCCCACT GCTGTCTGAT 
TCTGAGGATG AGAACCCGGA GGCCTTGCAG GACACACACT CTTCTGGGCC TCTGAATCAC 
TATAGTCTGT GTGAGCAGCC CCAGTCTGAC CTGCTGCTCC CAGCCACCCC ACCACCCTCT 
CCCAGACATC CCTCCACAGT GGTCATCAGC CAGCCTGCAC CCCTTTCATC TCCACACCAA 
CCCAGTGCTC GCTCACACAC TCACAGCTCT GAGTCGGAGG AAGAGTATGA GGCCGCTTTG 
TCAGGCGGGC ACAGCTCTGG AGAGGAGACA GCTCTTCTCC TGCCTGACAA CAGAGACACT 
ACCCTCGGAG AGCTGGCTGA GAGCCCCCTG TGGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern.
Cell153(4)759-72(2013 May)
Potok ME,Nix DA,Parnell TJ,Cairns BR

The zebrafish gene map defines ancestral vertebrate chromosomes.
Genome research15(9)1307-14(2005 Sep)
Woods IG,Wilson C,Friedlander B,Chang P,Reyes DK,Nix R,Kelly PD,Chu F,Postlethwait JH,Talbot WS

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オンライン注文

calcoco1a cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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