Gene Symbol | LOC103911540 |
Entrez Gene ID | 103911540 |
Full Name | H-2 class II histocompatibility antigen, E-S beta chain-like |
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » LOC103911540 cDNA ORF clone
Gene Symbol | LOC103911540 |
Entrez Gene ID | 103911540 |
Full Name | H-2 class II histocompatibility antigen, E-S beta chain-like |
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_009304130.1 | XP_009302405.1 | H-2 class II histocompatibility antigen, E-S beta chain-like |
NM_001005943.2 | NP_001005943.3 | uncharacterized protein LOC449770 precursor |
XM_009304130.2 | XP_009302405.1 | H-2 class II histocompatibility antigen, E-S beta chain-like |
Comparative transcriptome analysis of zebrafish (Danio rerio) brain and spleen infected with spring viremia of carp virus (SVCV).
Wang Y, Zhang H, Lu Y, Wang F, Liu L, Liu J, Liu X
Fish & shellfish immunology6935-45(2017 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC103911540 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC103911540 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa52986 | |
Clone ID Related Accession (Same CDS sequence) | XM_009304130.1 , NM_001005943.2 , XM_009304130.2 | |
Accession Version | NM_001005943.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 753bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-23 | |
Organism | Danio rerio(zebrafish) | |
Product | uncharacterized protein LOC449770 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH452369.1, EH465241.1 and CABZ01014762.1. On or before Mar 29, 2018 this sequence version replaced XM_009304130.2, NM_001005943.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC083466.1, EH452369.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTATCTGC TAAAACTTTT TCTTGCCATT CTGATGCTGG CGGCATTTAC TGGAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001005943.3 |
CDS | 38..790 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001005943.2 |
1 | ATGTATCTGC TAAAACTTTT TCTTGCCATT CTGATGCTGG CGGCATTTAC TGGAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa52986 | |
Clone ID Related Accession (Same CDS sequence) | XM_009304130.1 , NM_001005943.2 , XM_009304130.2 | |
Accession Version | XM_009304130.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 753bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | H-2 class II histocompatibility antigen, E-S beta chain-like | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007119.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTATCTGC TAAAACTTTT TCTTGCCATT CTGATGCTGG CGGCATTTAC TGGAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009302405.1 |
CDS | 46..798 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009304130.1 |
1 | ATGTATCTGC TAAAACTTTT TCTTGCCATT CTGATGCTGG CGGCATTTAC TGGAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa52986 | |
Clone ID Related Accession (Same CDS sequence) | XM_009304130.1 , NM_001005943.2 , XM_009304130.2 | |
Accession Version | XM_009304130.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 753bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | H-2 class II histocompatibility antigen, E-S beta chain-like | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007119.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_009304130.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTATCTGC TAAAACTTTT TCTTGCCATT CTGATGCTGG CGGCATTTAC TGGAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009302405.1 |
CDS | 56..808 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009304130.2 |
1 | ATGTATCTGC TAAAACTTTT TCTTGCCATT CTGATGCTGG CGGCATTTAC TGGAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Comparative transcriptome analysis of zebrafish (Danio rerio) brain and spleen infected with spring viremia of carp virus (SVCV). |