col9a1a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	col9a1a
Entrez Gene ID	100170785
Full Name	collagen, type IX, alpha 1a
Synonyms	zgc:194937
General protein information	Preferred Names collagen, type IX, alpha 1a Names collagen alpha-1(IX) chain
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001130624.1	NP_001124096.1	collagen alpha-1(IX) chain precursor

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	COL9A1	XP_001136406.1
Canis lupus familiaris (dog)	COL9A1	XP_538994.3
Danio rerio (zebrafish)	col9a1	NP_998429.2
Rattus norvegicus (Norway rat)	Col9a1	NP_001094312.1
Mus musculus (house mouse)	Col9a1	NP_031766.3
Danio rerio (zebrafish)	zgc:194937	NP_001124096.1
	COL9A1	XP_001111640.1
Xenopus tropicalis (tropical clawed frog)	col9a1	XP_002939444.2
Homo sapiens (human)	COL9A1	NP_001842.3
Gallus gallus (chicken)	COL9A1	NP_001094381.1

Gene Ontology
Bibliography

Related articles in PubMed

In Vivo Characterization of an AHR-Dependent Long Noncoding RNA Required for Proper
Garcia GR, Goodale BC, Wiley MW, La Du JK, Hendrix DA, Tanguay RL
Molecular pharmacology91(6)609-619(2017 Jun)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following col9a1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the col9a1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa00916	NM_001130624.1 Latest version!	Danio rerio collagen, type IX, alpha 1a (col9a1a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$426.30 $609.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

col9a1a ( NM_001130624.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001124096.1 Danio rerio collagen, type IX, alpha 1a (col9a1a), mRNA.

Price & Availability↑

CloneID	ODa00916
Clone ID Related Accession (Same CDS sequence)	NM_001130624.1
Accession Version	NM_001130624.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2064bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-11-23
Organism	Danio rerio(zebrafish)
Product	collagen alpha-1(IX) chain precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC163438.1. ##Evidence-Data-START## Transcript exon combination :: BC163438.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGGCGCACG CCGGGACTCT CCGCGCGTCC CTTCTATTGA TTTTACTTCA GTTAGTCCTC 
ATCATCTCCG CACAGAGGGG GCCAGTTGGT CCGAGAGGGC TGCCTGGACC TCCAGGGCTT 
CCTGGATTTC CTGGTGTAGA TGGCATTGAT GGTGAAAGAG GACCTGGCCC CGGCCCAGTT 
GGTCCCCCAG GCCTTGACGG AGACAATGGC AGAAATGGGT TAAATGGCCT TCCAGGAAAA 
CCTGGAGCAG ATGGTTTGAC TGGGCCCCGT GGTGCTCCTG GCCCTGTTGG CCCTACTGGA 
CAGAAAGGTG AACCTGGCGA GCCGGGACTG AGAGGAGCCG CTGGTGTTGG AGAGGATGGT 
GAAGCTGGTG CTGATGGAGA TGATGGTTTA CCTGGTGAGA TGGGAAAAGT TGGACCTCCA 
GGAAGCCGTG GAGTGAGAGG TCCTGTTGGT GATCAAGGAC TGCCTGGACC CAGAGGCCCT 
CCTGGAGTCT GGGATGGTAA GGAGCTGTGT CCAAATTCCT GCACTTCTGG CCTGCATGGA 
TACACAGGTC TTCCAGGCAT GAAGGGCCAC AAAGGTGTCA AAGGTGAATC AGGAGAACCA 
GGAAGGCAAG GACATAAGGG TGAAGAAGGA GACCAGGGAC GAACTGGAGA ACAGGGAACA 
CAAGGACTAC CTGGTAAGCA GGGTCTCAGA GGAATTACAG GATTGATGGG CCCTAAAGGG 
GACAGGGGAC CTCGTGGGAA TGTTGGAGAC CTGGGTCCTC AGGGTATTCA AGGTGCTCCT 
GGTGATCAAG GCCAAAGAGG AAAATATGGT GAAACTGGAC CAAAAGGGTC TCAGGGACCT 
GAAGGGTTGC AAGGACTTCC GGGTTTACCT GGACCAAAAG GAGACGCTGG TTTGCCTGCA 
GTTGATGCTC GTGATGGTAT TCCAGGACTG CCTGGAGTAA AGGGTCTTCC TGGAAAAGTT 
GGCTCTCCTG GGGATGCTGG ACTTCAGGGA TTTCCAGGTC TGCCTGGCAT TTCAGGAGCA 
AAAGGCCACA TGGGTCTAAA AGGAAGTACT GGTGATCCAG GTGTAGCAGG TCCAATTGGA 
AATAATGGAA AGACAGGTGA ACGTGGTGAG CAGGGGGAGG TGGGACCAGT TGGACCAAGA 
GGTGGGCCAG GTGAAAGAGG AGCAAGAGGT CCTGATGGGC CTGCAGGCCT TCCAGGTGCA 
AGGGGATCTA AAGGGGATCC CGGGCTTCCT GGTCTTCCAG GGCCTGCTGG ATTCATTGGA 
CAAAAAGGCG ACAGGGGTGC GGTTGGATTT ACTGGTCCTA AAGGAGAGCA AGGGCCATCT 
GGTGAAGAAG GAGCACCAGG AGACAAAGGA GATGTTGGTG ATGAAGGAGA GCCAGGCGAG 
AAAGGATCGA CAGGAAAACA AGGAGATCCA GGGAATAAAG GGCCAGAGGG TGCACGTGGC 
CAATCTGGAC CCGACGGCCC GGTGGGAGTG CCGGGTCCAA GAGGCATGCA AGGTGACCCA 
GGGGTCCCTG GATTGCCTGG AGCACAAGGA AAACCAGGCC GAGCACCAAC AGATGAACAT 
ATCAAGCAGG TCTGCAGAAG GGTTTTGCAT GGACAACTTG CTCAGCTGGC AGCCAGTCTG 
ACAAGGCCCG AGTCGGGCAT TGCTGGGTTG CCAGGTCCTC CTGGTCCTCC TGGCCCTCCG 
GGTTCATCTG GAGAAAATGG GTTCCCTGGG CATCCCGGAA GCAGAGGGCT GCCAGGCCTC 
AAAGGACCAC CAGGGCTCTT GGGGAGGAAA GGCCCCAAAG GTGACCAGGG TGATAGAGGT 
GACAGAGGGC CCACAGCAGT GGGACCTAAA GGTATACCTG GACCACCAGG ACTCCCAGGT 
GAGCCTGGTA AACCTGCGTA TGGCAGTAAT GGCCGGGATG GTCAGAGAGG GCCTGTAGGA 
GTTCCTGGAA TGCCAGGTGT GCCGGGGCCA CCCGGCCCCC CTGGCCTTAA CGGATACTGC 
GAGTCATCTC AGTGTGTTCT TCAAGCAGCC GCAGGCCAAC AGTCATTCAA AGAGTCCAAC 
ATGAAGGGGC CAGACGCTCT ATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001124096.1
CDS	66..2129
Translation	MAHAGTLRASLLLILLQLVLIISAQRGPVGPRGLPGPPGLPGFPGVDGIDGERGPGPGPVGPPGLDGDNGRNGLNGLPGKPGADGLTGPRGAPGPVGPTGQKGEPGEPGLRGAAGVGEDGEAGADGDDGLPGEMGKVGPPGSRGVRGPVGDQGLPGPRGPPGVWDGKELCPNSCTSGLHGYTGLPGMKGHKGVKGESGEPGRQGHKGEEGDQGRTGEQGTQGLPGKQGLRGITGLMGPKGDRGPRGNVGDLGPQGIQGAPGDQGQRGKYGETGPKGSQGPEGLQGLPGLPGPKGDAGLPAVDARDGIPGLPGVKGLPGKVGSPGDAGLQGFPGLPGISGAKGHMGLKGSTGDPGVAGPIGNNGKTGERGEQGEVGPVGPRGGPGERGARGPDGPAGLPGARGSKGDPGLPGLPGPAGFIGQKGDRGAVGFTGPKGEQGPSGEEGAPGDKGDVGDEGEPGEKGSTGKQGDPGNKGPEGARGQSGPDGPVGVPGPRGMQGDPGVPGLPGAQGKPGRAPTDEHIKQVCRRVLHGQLAQLAASLTRPESGIAGLPGPPGPPGPPGSSGENGFPGHPGSRGLPGLKGPPGLLGRKGPKGDQGDRGDRGPTAVGPKGIPGPPGLPGEPGKPAYGSNGRDGQRGPVGVPGMPGVPGPPGPPGLNGYCESSQCVLQAAAGQQSFKESNMKGPDAL

Target ORF information:

RefSeq Version	NM_001130624.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio collagen, type IX, alpha 1a (col9a1a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001130624.1

ORF Insert Sequence:

ATGGCGCACG CCGGGACTCT CCGCGCGTCC CTTCTATTGA TTTTACTTCA GTTAGTCCTC 
ATCATCTCCG CACAGAGGGG GCCAGTTGGT CCGAGAGGGC TGCCTGGACC TCCAGGGCTT 
CCTGGATTTC CTGGTGTAGA TGGCATTGAT GGTGAAAGAG GACCTGGCCC CGGCCCAGTT 
GGTCCCCCAG GCCTTGACGG AGACAATGGC AGAAATGGGT TAAATGGCCT TCCAGGAAAA 
CCTGGAGCAG ATGGTTTGAC TGGGCCCCGT GGTGCTCCTG GCCCTGTTGG CCCTACTGGA 
CAGAAAGGTG AACCTGGCGA GCCGGGACTG AGAGGAGCCG CTGGTGTTGG AGAGGATGGT 
GAAGCTGGTG CTGATGGAGA TGATGGTTTA CCTGGTGAGA TGGGAAAAGT TGGACCTCCA 
GGAAGCCGTG GAGTGAGAGG TCCTGTTGGT GATCAAGGAC TGCCTGGACC CAGAGGCCCT 
CCTGGAGTCT GGGATGGTAA GGAGCTGTGT CCAAATTCCT GCACTTCTGG CCTGCATGGA 
TACACAGGTC TTCCAGGCAT GAAGGGCCAC AAAGGTGTCA AAGGTGAATC AGGAGAACCA 
GGAAGGCAAG GACATAAGGG TGAAGAAGGA GACCAGGGAC GAACTGGAGA ACAGGGAACA 
CAAGGACTAC CTGGTAAGCA GGGTCTCAGA GGAATTACAG GATTGATGGG CCCTAAAGGG 
GACAGGGGAC CTCGTGGGAA TGTTGGAGAC CTGGGTCCTC AGGGTATTCA AGGTGCTCCT 
GGTGATCAAG GCCAAAGAGG AAAATATGGT GAAACTGGAC CAAAAGGGTC TCAGGGACCT 
GAAGGGTTGC AAGGACTTCC GGGTTTACCT GGACCAAAAG GAGACGCTGG TTTGCCTGCA 
GTTGATGCTC GTGATGGTAT TCCAGGACTG CCTGGAGTAA AGGGTCTTCC TGGAAAAGTT 
GGCTCTCCTG GGGATGCTGG ACTTCAGGGA TTTCCAGGTC TGCCTGGCAT TTCAGGAGCA 
AAAGGCCACA TGGGTCTAAA AGGAAGTACT GGTGATCCAG GTGTAGCAGG TCCAATTGGA 
AATAATGGAA AGACAGGTGA ACGTGGTGAG CAGGGGGAGG TGGGACCAGT TGGACCAAGA 
GGTGGGCCAG GTGAAAGAGG AGCAAGAGGT CCTGATGGGC CTGCAGGCCT TCCAGGTGCA 
AGGGGATCTA AAGGGGATCC CGGGCTTCCT GGTCTTCCAG GGCCTGCTGG ATTCATTGGA 
CAAAAAGGCG ACAGGGGTGC GGTTGGATTT ACTGGTCCTA AAGGAGAGCA AGGGCCATCT 
GGTGAAGAAG GAGCACCAGG AGACAAAGGA GATGTTGGTG ATGAAGGAGA GCCAGGCGAG 
AAAGGATCGA CAGGAAAACA AGGAGATCCA GGGAATAAAG GGCCAGAGGG TGCACGTGGC 
CAATCTGGAC CCGACGGCCC GGTGGGAGTG CCGGGTCCAA GAGGCATGCA AGGTGACCCA 
GGGGTCCCTG GATTGCCTGG AGCACAAGGA AAACCAGGCC GAGCACCAAC AGATGAACAT 
ATCAAGCAGG TCTGCAGAAG GGTTTTGCAT GGACAACTTG CTCAGCTGGC AGCCAGTCTG 
ACAAGGCCCG AGTCGGGCAT TGCTGGGTTG CCAGGTCCTC CTGGTCCTCC TGGCCCTCCG 
GGTTCATCTG GAGAAAATGG GTTCCCTGGG CATCCCGGAA GCAGAGGGCT GCCAGGCCTC 
AAAGGACCAC CAGGGCTCTT GGGGAGGAAA GGCCCCAAAG GTGACCAGGG TGATAGAGGT 
GACAGAGGGC CCACAGCAGT GGGACCTAAA GGTATACCTG GACCACCAGG ACTCCCAGGT 
GAGCCTGGTA AACCTGCGTA TGGCAGTAAT GGCCGGGATG GTCAGAGAGG GCCTGTAGGA 
GTTCCTGGAA TGCCAGGTGT GCCGGGGCCA CCCGGCCCCC CTGGCCTTAA CGGATACTGC 
GAGTCATCTC AGTGTGTTCT TCAAGCAGCC GCAGGCCAAC AGTCATTCAA AGAGTCCAAC 
ATGAAGGGGC CAGACGCTCT ATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

In Vivo Characterization of an AHR-Dependent Long Noncoding RNA Required for Proper
Molecular pharmacology91(6)609-619(2017 Jun)
Garcia GR,Goodale BC,Wiley MW,La Du JK,Hendrix DA,Tanguay RL

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

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col9a1a cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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