ccl38.6 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	ccl38.6
Entrez Gene ID	100034523
Full Name	chemokine (C-C motif) ligand 38, duplicate 6
Synonyms	CCL-chr20b,CCL38af,si:dkeyp-59a8.1,wu:fj16d01
General protein information	Preferred Names chemokine (C-C motif) ligand 38, duplicate 6 Names uncharacterized protein LOC100034523 Dr20_WGA1544_1_380308 dr-chr20-CCL7-35.6-DN
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_017352715.1	XP_017208204.1	uncharacterized protein LOC100034523
NM_001083080.2	NP_001076549.2	uncharacterized protein LOC100034523 precursor
XM_017352715.2	XP_017208204.1	uncharacterized protein LOC100034523
NM_001083080.3	NP_001076549.3	uncharacterized protein LOC100034523 precursor

Pathways from BioSystems

Homologies

Danio rerio (zebrafish)	si:dkeyp-59a8.2	NP_001025344.1
Danio rerio (zebrafish)	si:dkeyp-59a8.3	NP_001076357.2
Danio rerio (zebrafish)	si:dkeyp-59a8.1	XP_005160896.1
Danio rerio (zebrafish)	si:dkey-217m5.3	NP_001076365.2
Danio rerio (zebrafish)	si:dkeyp-59a8.5	XP_005160897.1

Gene Ontology
Bibliography

Related articles in PubMed

Pathogen response-like recruitment and activation of neutrophils by sterile immunogenic dying cells drives neutrophil-mediated residual cell killing.
Garg AD, Vandenberk L, Fang S, Fasche T, Van Eygen S, Maes J, Van Woensel M, Koks C, Vanthillo N, Graf N, de Witte P, Van Gool S, Salven P, Agostinis P
Cell death and differentiation24(5)832-843(2017 May)

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types.
Carmona SJ, Teichmann SA, Ferreira L, Macaulay IC, Stubbington MJ, Cvejic A, Gfeller D
Genome research27(3)451-461(2017 Mar)

Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes.
Briolat V, Jouneau L, Carvalho R, Palha N, Langevin C, Herbomel P, Schwartz O, Spaink HP, Levraud JP, Boudinot P
Journal of immunology (Baltimore, Md. : 1950)192(9)4328-41(2014 May)

Systematic classification of vertebrate chemokines based on conserved synteny and evolutionary history.
Nomiyama H, Osada N, Yoshie O
Genes to cells : devoted to molecular & cellular mechanisms18(1)1-16(2013 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following ccl38.6 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ccl38.6 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa35650	NM_001083080.2 Latest version!	Danio rerio chemokine (C-C motif) ligand 38, duplicate 6 (ccl38.6), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$69.30 $99.00
ODa56734	NM_001083080.3 Latest version!	Danio rerio chemokine (C-C motif) ligand 38, duplicate 6 (ccl38.6), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$69.30 $99.00
ODa56734	XM_017352715.2 Latest version!	Danio rerio chemokine (C-C motif) ligand 38, duplicate 6 (ccl38.6), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$69.30 $99.00
View Old Accession Versions >>
ODa56734	XM_017352715.1	Danio rerio si:dkeyp-59a8.1 (si:dkeyp-59a8.1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$69.30 $99.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

ccl38.6 ( NM_001083080.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001076549.2 Danio rerio chemokine (C-C motif) ligand 38, duplicate 6 (ccl38.6), mRNA.

Price & Availability↑

CloneID	ODa35650
Clone ID Related Accession (Same CDS sequence)	NM_001083080.2
Accession Version	NM_001083080.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 312bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-08-19
Organism	Danio rerio(zebrafish)
Product	uncharacterized protein LOC100034523 precursor
Comment	Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BC150342.1. On or before Oct 5, 2014 this sequence version replaced XM_009294898.1, XM_005160839.1, NM_001083080.1. ##Evidence-Data-START## Transcript exon combination :: BC150342.1, EH454492.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGAGGACGT CCTGCATCTT CATCACCTCT CTGGTGCTCG TCGCTTTCTG CGCAATGGCT 
AGAAGTGAAC GGTCCCAAGG TCCCGATAAG TGCTGCTTTT CTTTTTCCAA TGCAAGAATT 
CCAGTAAAGC AGATTGAGAG TTATCATACT ACTCATCTTC AGTGCAACAT GAATAGTGTT 
ATTTTCATCA CAAAGGCTCA AAGGGAGATC TGCACTAACC CGACTGAGAA ATGGGTTCAG 
AGACTGATGA AGATGGTGGA CAAACAAAAC ATGAAGCAGA TGACCGAGGC CGGCTCTGCG 
GACAGCCCCT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001076549.2
CDS	101..412
Translation	MRTSCIFITSLVLVAFCAMARSERSQGPDKCCFSFSNARIPVKQIESYHTTHLQCNMNSVIFITKAQREICTNPTEKWVQRLMKMVDKQNMKQMTEAGSADSP

Target ORF information:

RefSeq Version	NM_001083080.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio chemokine (C-C motif) ligand 38, duplicate 6 (ccl38.6), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001083080.2

ORF Insert Sequence:

ATGAGGACGT CCTGCATCTT CATCACCTCT CTGGTGCTCG TCGCTTTCTG CGCAATGGCT 
AGAAGTGAAC GGTCCCAAGG TCCCGATAAG TGCTGCTTTT CTTTTTCCAA TGCAAGAATT 
CCAGTAAAGC AGATTGAGAG TTATCATACT ACTCATCTTC AGTGCAACAT GAATAGTGTT 
ATTTTCATCA CAAAGGCTCA AAGGGAGATC TGCACTAACC CGACTGAGAA ATGGGTTCAG 
AGACTGATGA AGATGGTGGA CAAACAAAAC ATGAAGCAGA TGACCGAGGC CGGCTCTGCG 
GACAGCCCCT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ccl38.6 ( NM_001083080.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001076549.3 Danio rerio chemokine (C-C motif) ligand 38, duplicate 6 (ccl38.6), mRNA.

Price & Availability↑

CloneID	ODa56734
Clone ID Related Accession (Same CDS sequence)	XM_017352715.1 , XM_017352715.2 , NM_001083080.3
Accession Version	NM_001083080.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 312bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-09-29
Organism	Danio rerio(zebrafish)
Product	uncharacterized protein LOC100034523 precursor
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX957287.9 and EH454492.1. On or before Mar 13, 2018 this sequence version replaced XM_017352715.2, NM_001083080.2. ##Evidence-Data-START## Transcript exon combination :: AW232238.1, BC150342.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGAGAACGT CCTGCATCTT CATCGCCTCT CTGGTGCTCG TTGCTTTCTG CGCAATGGCT 
AGAAGTGAAT GGTCCCAGAG TCCTGATAAA TGCTGCTTTT CTTTTTCCAA TGCAAGAATT 
CCAGTAAAGC AGGTTGTGAG CTATCATACT ACACATCTTC AGTGCAACAT GAATGGTGTT 
ATTTTCATCA CAAGGGCTCA AAAGGAGATC TGCACTAACC CGACTGAGAA ATGGGTTCAG 
AGACTGATGA AGATGGTGGA CAATCAAAAC ATGAAGCAGA TGACCGAGGC CGGCTCTGCG 
GATAGCCCCT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001076549.3
CDS	100..411
Translation	MRTSCIFIASLVLVAFCAMARSEWSQSPDKCCFSFSNARIPVKQVVSYHTTHLQCNMNGVIFITRAQKEICTNPTEKWVQRLMKMVDNQNMKQMTEAGSADSP

Target ORF information:

RefSeq Version	NM_001083080.3
Organism	Danio rerio(zebrafish)
Definition	Danio rerio chemokine (C-C motif) ligand 38, duplicate 6 (ccl38.6), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001083080.3

ORF Insert Sequence:

ATGAGAACGT CCTGCATCTT CATCGCCTCT CTGGTGCTCG TTGCTTTCTG CGCAATGGCT 
AGAAGTGAAT GGTCCCAGAG TCCTGATAAA TGCTGCTTTT CTTTTTCCAA TGCAAGAATT 
CCAGTAAAGC AGGTTGTGAG CTATCATACT ACACATCTTC AGTGCAACAT GAATGGTGTT 
ATTTTCATCA CAAGGGCTCA AAAGGAGATC TGCACTAACC CGACTGAGAA ATGGGTTCAG 
AGACTGATGA AGATGGTGGA CAATCAAAAC ATGAAGCAGA TGACCGAGGC CGGCTCTGCG 
GATAGCCCCT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ccl38.6 ( XM_017352715.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_017208204.1 Danio rerio si:dkeyp-59a8.1 (si:dkeyp-59a8.1), mRNA.

Price & Availability↑

CloneID	ODa56734
Clone ID Related Accession (Same CDS sequence)	XM_017352715.1 , XM_017352715.2 , NM_001083080.3
Accession Version	XM_017352715.1	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 312bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	uncharacterized protein LOC100034523
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007131.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGAGAACGT CCTGCATCTT CATCGCCTCT CTGGTGCTCG TTGCTTTCTG CGCAATGGCT 
AGAAGTGAAT GGTCCCAGAG TCCTGATAAA TGCTGCTTTT CTTTTTCCAA TGCAAGAATT 
CCAGTAAAGC AGGTTGTGAG CTATCATACT ACACATCTTC AGTGCAACAT GAATGGTGTT 
ATTTTCATCA CAAGGGCTCA AAAGGAGATC TGCACTAACC CGACTGAGAA ATGGGTTCAG 
AGACTGATGA AGATGGTGGA CAATCAAAAC ATGAAGCAGA TGACCGAGGC CGGCTCTGCG 
GATAGCCCCT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017208204.1
CDS	310..621
Translation	MRTSCIFIASLVLVAFCAMARSEWSQSPDKCCFSFSNARIPVKQVVSYHTTHLQCNMNGVIFITRAQKEICTNPTEKWVQRLMKMVDNQNMKQMTEAGSADSP

Target ORF information:

RefSeq Version	XM_017352715.1
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio si:dkeyp-59a8.1 (si:dkeyp-59a8.1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017352715.1

ORF Insert Sequence:

ATGAGAACGT CCTGCATCTT CATCGCCTCT CTGGTGCTCG TTGCTTTCTG CGCAATGGCT 
AGAAGTGAAT GGTCCCAGAG TCCTGATAAA TGCTGCTTTT CTTTTTCCAA TGCAAGAATT 
CCAGTAAAGC AGGTTGTGAG CTATCATACT ACACATCTTC AGTGCAACAT GAATGGTGTT 
ATTTTCATCA CAAGGGCTCA AAAGGAGATC TGCACTAACC CGACTGAGAA ATGGGTTCAG 
AGACTGATGA AGATGGTGGA CAATCAAAAC ATGAAGCAGA TGACCGAGGC CGGCTCTGCG 
GATAGCCCCT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ccl38.6 ( XM_017352715.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_017208204.1 Danio rerio chemokine (C-C motif) ligand 38, duplicate 6 (ccl38.6), mRNA.

Price & Availability↑

CloneID	ODa56734
Clone ID Related Accession (Same CDS sequence)	XM_017352715.1 , XM_017352715.2 , NM_001083080.3
Accession Version	XM_017352715.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 312bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	uncharacterized protein LOC100034523
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007131.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017352715.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGAGAACGT CCTGCATCTT CATCGCCTCT CTGGTGCTCG TTGCTTTCTG CGCAATGGCT 
AGAAGTGAAT GGTCCCAGAG TCCTGATAAA TGCTGCTTTT CTTTTTCCAA TGCAAGAATT 
CCAGTAAAGC AGGTTGTGAG CTATCATACT ACACATCTTC AGTGCAACAT GAATGGTGTT 
ATTTTCATCA CAAGGGCTCA AAAGGAGATC TGCACTAACC CGACTGAGAA ATGGGTTCAG 
AGACTGATGA AGATGGTGGA CAATCAAAAC ATGAAGCAGA TGACCGAGGC CGGCTCTGCG 
GATAGCCCCT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017208204.1
CDS	413..724
Translation	MRTSCIFIASLVLVAFCAMARSEWSQSPDKCCFSFSNARIPVKQVVSYHTTHLQCNMNGVIFITRAQKEICTNPTEKWVQRLMKMVDNQNMKQMTEAGSADSP

Target ORF information:

RefSeq Version	XM_017352715.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio chemokine (C-C motif) ligand 38, duplicate 6 (ccl38.6), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017352715.2

ORF Insert Sequence:

ATGAGAACGT CCTGCATCTT CATCGCCTCT CTGGTGCTCG TTGCTTTCTG CGCAATGGCT 
AGAAGTGAAT GGTCCCAGAG TCCTGATAAA TGCTGCTTTT CTTTTTCCAA TGCAAGAATT 
CCAGTAAAGC AGGTTGTGAG CTATCATACT ACACATCTTC AGTGCAACAT GAATGGTGTT 
ATTTTCATCA CAAGGGCTCA AAAGGAGATC TGCACTAACC CGACTGAGAA ATGGGTTCAG 
AGACTGATGA AGATGGTGGA CAATCAAAAC ATGAAGCAGA TGACCGAGGC CGGCTCTGCG 
GATAGCCCCT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Pathogen response-like recruitment and activation of neutrophils by sterile immunogenic dying cells drives neutrophil-mediated residual cell killing.
Cell death and differentiation24(5)832-843(2017 May)
Garg AD,Vandenberk L,Fang S,Fasche T,Van Eygen S,Maes J,Van Woensel M,Koks C,Vanthillo N,Graf N,de Witte P,Van Gool S,Salven P,Agostinis P

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types.
Genome research27(3)451-461(2017 Mar)
Carmona SJ,Teichmann SA,Ferreira L,Macaulay IC,Stubbington MJ,Cvejic A,Gfeller D

Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes.
Journal of immunology (Baltimore, Md. : 1950)192(9)4328-41(2014 May)
Briolat V,Jouneau L,Carvalho R,Palha N,Langevin C,Herbomel P,Schwartz O,Spaink HP,Levraud JP,Boudinot P

Systematic classification of vertebrate chemokines based on conserved synteny and evolutionary history.
Genes to cells : devoted to molecular & cellular mechanisms18(1)1-16(2013 Jan)
Nomiyama H,Osada N,Yoshie O

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ccl38.6 cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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