Gene Symbol | HMGB3 |
Entrez Gene ID | 613729 |
Full Name | high mobility group box 3 |
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
ORF » Species Summary » Bos taurus » HMGB3 cDNA ORF clone
Gene Symbol | HMGB3 |
Entrez Gene ID | 613729 |
Full Name | high mobility group box 3 |
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
mRNA | Protein | Name |
---|---|---|
XM_024988206.1 | XP_024843974.1 | high mobility group protein B3 isoform X1 |
XM_024988207.1 | XP_024843975.1 | high mobility group protein B3 isoform X2 |
NM_001076285.2 | NP_001069753.2 | high mobility group protein B3 isoform 1 |
NM_001113257.2 | NP_001106728.1 | high mobility group protein B3 isoform 2 |
Homo sapiens (human) | HMGB3 | NP_005333.2 |
Canis lupus familiaris (dog) | HMGB3 | XP_538194.2 |
Pan troglodytes (chimpanzee) | HMGB3 | XP_001135676.3 |
Rattus norvegicus (Norway rat) | LOC688583 | XP_006251075.1 |
Gallus gallus (chicken) | HMGB3 | NP_990626.2 |
Xenopus tropicalis (tropical clawed frog) | hmgb3 | NP_001004888.1 |
LOC703598 | XP_001091441.1 | |
Bos taurus (cattle) | HMGB3 | NP_001069753.2 |
Multiple promoters and targeted microRNAs direct the expressions of HMGB3 gene transcripts in dairy cattle.
Li L, Huang J, Ju Z, Li Q, Wang C, Qi C, Zhang Y, Hou Q, Hang S, Zhong J
Animal genetics44(3)241-50(2013 Jun)
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Mar?ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)
The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures.
Paull TT, Haykinson MJ, Johnson RC
Genes & development7(8)1521-34(1993 Aug)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
HMGB3 expression is under complex transcriptional and post-transcriptional control by alternate promoter usage, alternative splicing mechanism and microRNAs in dairy cattle.
Title: Multiple promoters and targeted microRNAs direct the expressions of HMGB3 gene transcripts in dairy cattle.
The following HMGB3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the HMGB3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OBa44544 | |
Clone ID Related Accession (Same CDS sequence) | XM_024988207.1 , NM_001113257.2 | |
Accession Version | NM_001113257.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 603bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-27 | |
Organism | Bos taurus(cattle) | |
Product | high mobility group protein B3 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EE334754.1 and DN519356.1. On Sep 16, 2011 this sequence version replaced NM_001113257.1. Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1. Sequence Note: This RefSeq record was created from transcripts of different strains because no single transcript from the same strain was available for the full length of the gene. The extent of this transcript is supported by transcript alignments and orthologous data. ##Evidence-Data-START## Transcript exon combination :: EE334754.1, DY454015.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03145419, SAMN03145420 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCTAAAG GTGATCCCAA GAAACCAAAG GGCAAGATGT CTGCTTATGC CTTCTTTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001106728.1 |
CDS | 87..689 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001113257.2 |
1 | ATGGCTAAAG GTGATCCCAA GAAACCAAAG GGCAAGATGT CTGCTTATGC CTTCTTTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa44544 | |
Clone ID Related Accession (Same CDS sequence) | XM_024988207.1 , NM_001113257.2 | |
Accession Version | XM_024988207.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 603bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | high mobility group protein B3 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037357.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTAAAG GTGATCCCAA GAAACCAAAG GGCAAGATGT CTGCTTATGC CTTCTTTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024843975.1 |
CDS | 104..706 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024988207.1 |
1 | ATGGCTAAAG GTGATCCCAA GAAACCAAAG GGCAAGATGT CTGCTTATGC CTTCTTTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa238484 | |
Clone ID Related Accession (Same CDS sequence) | XM_024988206.1 | |
Accession Version | XM_024988206.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 615bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | high mobility group protein B3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037357.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAAGTCA AGATGGCTAA AGGTGATCCC AAGAAACCAA AGGGCAAGAT GTCTGCTTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024843974.1 |
CDS | 157..771 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024988206.1 |
1 | ATGGAAGTCA AGATGGCTAA AGGTGATCCC AAGAAACCAA AGGGCAAGAT GTCTGCTTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa44492 | |
Clone ID Related Accession (Same CDS sequence) | NM_001076285.2 | |
Accession Version | NM_001076285.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 825bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-21 | |
Organism | Bos taurus(cattle) | |
Product | high mobility group protein B3 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EV609191.1, BC109793.1 and DN519356.1. On Sep 16, 2011 this sequence version replaced NM_001076285.1. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Sequence Note: This RefSeq record was created from transcripts of different strains because no single transcript from the same strain was available for the full length of the gene. The extent of this transcript is supported by transcript alignments and orthologous data. ##Evidence-Data-START## Transcript exon combination :: BC109793.1, DT836500.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03145491, SAMN03145497 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGAAAGTC TTCCTTCGAT GAGTGAGAAG ACGAAGTTTG TCCTTCAGGG AGCAGACATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001069753.2 |
CDS | 120..944 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001076285.2 |
1 | ATGGAAAGTC TTCCTTCGAT GAGTGAGAAG ACGAAGTTTG TCCTTCAGGG AGCAGACATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Multiple promoters and targeted microRNAs direct the expressions of HMGB3 gene transcripts in dairy cattle. |
A whole-genome assembly of the domestic cow, Bos taurus. |
The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures. |