Gene Symbol | CHI3L1 |
Entrez Gene ID | 286869 |
Full Name | chitinase 3-like 1 (cartilage glycoprotein-39) |
Synonyms | CGP-39,CLP-1,GP-39,SPC-40,SPS-40,YKL-40 |
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
ORF » Species Summary » Bos taurus » CHI3L1 cDNA ORF clone
Gene Symbol | CHI3L1 |
Entrez Gene ID | 286869 |
Full Name | chitinase 3-like 1 (cartilage glycoprotein-39) |
Synonyms | CGP-39,CLP-1,GP-39,SPC-40,SPS-40,YKL-40 |
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
mRNA | Protein | Name |
---|---|---|
NM_001080219.1 | NP_001073688.1 | chitinase-3-like protein 1 precursor |
Pan troglodytes (chimpanzee) | CHI3L1 | XP_001153636.2 |
Rattus norvegicus (Norway rat) | Chi3l1 | NP_446012.1 |
CHI3L1 | XP_001103739.1 | |
Bos taurus (cattle) | CHI3L1 | NP_001073688.1 |
Neurospora crassa | NCU04883 | XP_957924.1 |
Canis lupus familiaris (dog) | CHI3L1 | NP_001171278.1 |
Mus musculus (house mouse) | Chil1 | NP_031721.2 |
Magnaporthe oryzae (rice blast fungus) | MGG_00086 | XP_003719052.1 |
Homo sapiens (human) | CHI3L1 | NP_001267.2 |
Tryptophan as a three-way switch in regulating the function of the secretory signalling glycoprotein (SPS-40) from mammary glands: structure of SPS-40 complexed with 2-methylpentane-2,4-diol at 1.6 A resolution.
Sharma P, Singh N, Sinha M, Sharma S, Perbandt M, Betzel C, Kaur P, Srinivasan A, Singh TP
Acta crystallographica. Section D, Biological crystallography65(Pt 4)375-8(2009 Apr)
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Mar?ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)
The mammalian chitinase-like lectin, YKL-40, binds specifically to type I collagen and modulates the rate of type I collagen fibril formation.
Bigg HF, Wait R, Rowan AD, Cawston TE
The Journal of biological chemistry281(30)21082-95(2006 Jul)
Characterization of 954 bovine full-CDS cDNA sequences.
Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP
BMC genomics6166(2005 Nov)
Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle.
Smith TP, Grosse WM, Freking BA, Roberts AJ, Stone RT, Casas E, Wray JE, White J, Cho J, Fahrenkrug SC, Bennett GL, Heaton MP, Laegreid WW, Rohrer GA, Chitko-McKown CG, Pertea G, Holt I, Karamycheva S, Liang F, Quackenbush J, Keele JW
Genome research11(4)626-30(2001 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Two 2-methylpentane-2,4-diol molecules are bound at subsites -2 and -1, inducing a rare obstructive conformation of Trp78 and twisting of the side chains of Glu269 and Ile272.
Title: Tryptophan as a three-way switch in regulating the function of the secretory signalling glycoprotein (SPS-40) from mammary glands: structure of SPS-40 complexed with 2-methylpentane-2,4-diol at 1.6 A resolution.
chitinase-like lectin, YKL-40, binds specifically to type I collagen and modulates the rate of type I collagen fibril formation
Title: The mammalian chitinase-like lectin, YKL-40, binds specifically to type I collagen and modulates the rate of type I collagen fibril formation.
The following CHI3L1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CHI3L1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OBa42382 | |
Clone ID Related Accession (Same CDS sequence) | NM_001080219.1 | |
Accession Version | NM_001080219.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1176bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-19 | |
Organism | Bos taurus(cattle) | |
Product | chitinase-3-like protein 1 precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT021835.1. On Jan 16, 2007 this sequence version replaced XM_865491.2. ##Evidence-Data-START## Transcript exon combination :: BT021835.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN03145412, SAMN03145413 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGCCCTCCT CTGCTGCAGC CAGGATGGGG CTGAGGGCGG CTCATACAGG TTTTGTGGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001073688.1 |
CDS | 89..1264 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001080219.1 |
1 | ATGCCCTCCT CTGCTGCAGC CAGGATGGGG CTGAGGGCGG CTCATACAGG TTTTGTGGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Tryptophan as a three-way switch in regulating the function of the secretory signalling glycoprotein (SPS-40) from mammary glands: structure of SPS-40 complexed with 2-methylpentane-2,4-diol at 1.6 A resolution. |
A whole-genome assembly of the domestic cow, Bos taurus. |
The mammalian chitinase-like lectin, YKL-40, binds specifically to type I collagen and modulates the rate of type I collagen fibril formation. |
Characterization of 954 bovine full-CDS cDNA sequences. |
Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. |