Gene Symbol | PTBP1 |
Entrez Gene ID | 282018 |
Full Name | polypyrimidine tract binding protein 1 |
Synonyms | PTB |
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
ORF » Species Summary » Bos taurus » PTBP1 cDNA ORF clone
Gene Symbol | PTBP1 |
Entrez Gene ID | 282018 |
Full Name | polypyrimidine tract binding protein 1 |
Synonyms | PTB |
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
mRNA | Protein | Name |
---|---|---|
NM_174442.3 | NP_776867.1 | polypyrimidine tract-binding protein 1 isoform 2 |
XM_010807217.1 | XP_010805519.1 | polypyrimidine tract-binding protein 1 isoform X1 |
NM_001302784.1 | NP_001289713.1 | polypyrimidine tract-binding protein 1 isoform 1 |
XM_010807218.2 | XP_010805520.1 | polypyrimidine tract-binding protein 1 isoform X1 |
XM_010807217.2 | XP_010805519.1 | polypyrimidine tract-binding protein 1 isoform X1 |
PTBP1 | XP_001092088.2 | |
Danio rerio (zebrafish) | ptbp1b | NP_001116126.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP003945 | XP_318405.4 |
Arabidopsis thaliana (thale cress) | PTB3 | NP_001077673.1 |
Xenopus tropicalis (tropical clawed frog) | ptbp1 | NP_001011140.1 |
Homo sapiens (human) | PTBP1 | NP_002810.1 |
Canis lupus familiaris (dog) | PTBP1 | XP_542215.2 |
Caenorhabditis elegans (roundworm) | ptb-1 | NP_741041.1 |
Drosophila melanogaster (fruit fly) | heph | NP_788776.2 |
Oryza sativa (rice) | Os05g0437300 | NP_001055652.1 |
Pan troglodytes (chimpanzee) | PTBP1 | XP_001172084.2 |
Bos taurus (cattle) | PTBP1 | NP_776867.1 |
Mus musculus (house mouse) | Ptbp1 | NP_001070831.1 |
Rattus norvegicus (Norway rat) | Ptbp1 | NP_001257986.1 |
Gallus gallus (chicken) | PTBP1 | NP_001026106.1 |
Danio rerio (zebrafish) | ptbp1a | NP_001018313.1 |
Oryza sativa (rice) | Os01g0867800 | NP_001044916.1 |
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Mar?ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following PTBP1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PTBP1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OBa41300 | |
Clone ID Related Accession (Same CDS sequence) | NM_174442.3 | |
Accession Version | NM_174442.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1596bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-27 | |
Organism | Bos taurus(cattle) | |
Product | polypyrimidine tract-binding protein 1 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EE365622.1, AF445640.1, BC103383.1 and EV638482.1. On Nov 26, 2014 this sequence version replaced NM_174442.2. Transcript Variant: This variant (2) lacks an alternate in-frame exon in the central coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1. Sequence Note: This RefSeq record was created from transcripts of different breeds because no single transcript from the same breed was available for the full length of the gene. The extent of this transcript is supported by transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AF445640.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03145412, SAMN03145413 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGACGGCA TCGTCCCAGA CATAGCAGTT GGTACAAAGC GGGGATCTGA CGAACTCTTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_776867.1 |
CDS | 89..1684 |
Translation |
Target ORF information:
Target ORF information:
|
NM_174442.3 |
1 | ATGGACGGCA TCGTCCCAGA CATAGCAGTT GGTACAAAGC GGGGATCTGA CGAACTCTTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa45310 | |
Clone ID Related Accession (Same CDS sequence) | NM_001302784.1 | |
Accession Version | NM_001302784.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1674bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-22 | |
Organism | Bos taurus(cattle) | |
Product | polypyrimidine tract-binding protein 1 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EE365622.1, DT721646.1, DN742111.1, EV638594.1, DV820586.1 and EV638482.1. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Sequence Note: This RefSeq record was created from transcripts of different breeds because no single transcript from the same breed was available for the full length of the gene. The extent of this transcript is supported by transcript alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN03145412, SAMN03145413 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGACGGCA TCGTCCCAGA CATAGCAGTT GGTACAAAGC GGGGATCTGA CGAACTCTTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001289713.1 |
CDS | 89..1762 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001302784.1 |
1 | ATGGACGGCA TCGTCCCAGA CATAGCAGTT GGTACAAAGC GGGGATCTGA CGAACTCTTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa45309 | |
Clone ID Related Accession (Same CDS sequence) | XM_010807217.1 , XM_010807218.2 | |
Accession Version | XM_010807217.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1584bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-25 | |
Organism | Bos taurus(cattle) | |
Product | polypyrimidine tract-binding protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003104031.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Bos taurus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCGGCA CCTCGGCGTC CACAGCAAAT GGAAACGACA GCAAGAAGTT CAAGGGGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_010805519.1 |
CDS | 343..1926 |
Translation |
Target ORF information:
Target ORF information:
|
XM_010807217.1 |
1 | ATGAGCGGCA CCTCGGCGTC CACAGCAAAT GGAAACGACA GCAAGAAGTT CAAGGGGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa45309 | |
Clone ID Related Accession (Same CDS sequence) | XM_010807217.1 , XM_010807218.2 | |
Accession Version | XM_010807218.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1584bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-25 | |
Organism | Bos taurus(cattle) | |
Product | polypyrimidine tract-binding protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003104031.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 26, 2016 this sequence version replaced XM_010807218.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Bos taurus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCGGCA CCTCGGCGTC CACAGCAAAT GGAAACGACA GCAAGAAGTT CAAGGGGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_010805520.1 |
CDS | 157..1740 |
Translation |
Target ORF information:
Target ORF information:
|
XM_010807218.2 |
1 | ATGAGCGGCA CCTCGGCGTC CACAGCAAAT GGAAACGACA GCAAGAAGTT CAAGGGGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa235767 | |
Clone ID Related Accession (Same CDS sequence) | XM_010807217.2 | |
Accession Version | XM_010807217.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1584bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | polypyrimidine tract-binding protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037334.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 7, 2018 this sequence version replaced XM_010807217.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCGGCA CCTCGGCGTC CACAGCAAAT GGAAACGACA GCAAGAAGTT CAAGGGGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_010805519.1 |
CDS | 471..2054 |
Translation |
Target ORF information:
Target ORF information:
|
XM_010807217.2 |
1 | ATGAGCGGCA CCTCGGCGTC CACAGCAAAT GGAAACGACA GCAAGAAGTT CAAGGGGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A whole-genome assembly of the domestic cow, Bos taurus. |