Gene Symbol | CAPNS1 |
Entrez Gene ID | 281664 |
Full Name | calpain small subunit 1 |
Synonyms | CAPN4 |
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
ORF » Species Summary » Bos taurus » CAPNS1 cDNA ORF clone
Gene Symbol | CAPNS1 |
Entrez Gene ID | 281664 |
Full Name | calpain small subunit 1 |
Synonyms | CAPN4 |
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
mRNA | Protein | Name |
---|---|---|
XM_024977941.1 | XP_024833709.1 | calpain small subunit 1 isoform X1 |
NM_174261.1 | NP_776686.1 | calpain small subunit 1 |
LOC712561 | XP_002808235.1 | |
Rattus norvegicus (Norway rat) | LOC100911363 | XP_003748884.1 |
Danio rerio (zebrafish) | capns1a | NP_001017899.2 |
Danio rerio (zebrafish) | capns1b | NP_001103176.1 |
Homo sapiens (human) | CAPNS1 | NP_001003962.1 |
Pan troglodytes (chimpanzee) | CAPNS1 | XP_003953505.1 |
Xenopus tropicalis (tropical clawed frog) | capns2 | NP_001016161.1 |
Canis lupus familiaris (dog) | CAPNS1 | XP_853634.1 |
Mus musculus (house mouse) | Capns1 | NP_033925.2 |
Rattus norvegicus (Norway rat) | Capns1 | NP_058814.1 |
Bos taurus (cattle) | CAPNS1 | NP_776686.1 |
Rattus norvegicus (Norway rat) | LOC100912380 | XP_003748875.2 |
A new SNP in the 3'UTR region of the bovine calpain small subunit (CAPNS1) gene.
Juszczuk-Kubiak E, Flisikowski K, Wici?ska K
Molecular biology reports37(1)473-6(2010 Jan)
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Mar?ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)
Identification of major autolytic cleavage sites in the regulatory subunit of vascular calpain II. A comparison of partial amino-terminal sequences to deduced sequence from complementary DNA.
McCelland P, Lash JA, Hathaway DR
The Journal of biological chemistry264(29)17428-31(1989 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
A new single nucleotide polymorphism was found in the bovine CAPNS1 gene exon 11 coding for the 3'UTR.
Title: A new SNP in the 3'UTR region of the bovine calpain small subunit (CAPNS1) gene.
The following CAPNS1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CAPNS1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OBa224785 | |
Clone ID Related Accession (Same CDS sequence) | XM_024977941.1 | |
Accession Version | XM_024977941.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 642bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | calpain small subunit 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037345.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGGCAA GGCTAGCCTT GTGCGCACGG CGTGGCCCTC GTAGTGAGGC GGCTGCGCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024833709.1 |
CDS | 281..922 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024977941.1 |
1 | ATGGGGGCAA GGCTAGCCTT GTGCGCACGG CGTGGCCCTC GTAGTGAGGC GGCTGCGCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa43499 | |
Clone ID Related Accession (Same CDS sequence) | NM_174261.1 | |
Accession Version | NM_174261.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 792bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-25 | |
Organism | Bos taurus(cattle) | |
Product | calpain small subunit 1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from J05065.1. Sequence Note: This sequence has been modified as follows: removed 28 bp suspected to be vector contamination from the 5' end. ##Evidence-Data-START## Transcript exon combination :: J05065.1, DV928241.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03145412, SAMN03145413 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTTCCTGG TTAACTCGTT CTTGAAGGGT GGCGGAGGCG GCGGAGGAGG CGGGGGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_776686.1 |
CDS | 36..827 |
Translation |
Target ORF information:
Target ORF information:
|
NM_174261.1 |
1 | ATGTTCCTGG TTAACTCGTT CTTGAAGGGT GGCGGAGGCG GCGGAGGAGG CGGGGGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A new SNP in the 3'UTR region of the bovine calpain small subunit (CAPNS1) gene. |
A whole-genome assembly of the domestic cow, Bos taurus. |
Identification of major autolytic cleavage sites in the regulatory subunit of vascular calpain II. A comparison of partial amino-terminal sequences to deduced sequence from complementary DNA. |