Gene Symbol | KU80 |
Entrez Gene ID | 841223 |
Full Name | Ku80 family protein |
Synonyms | ARABIDOPSIS THALIANA KU80 HOMOLOG,ATKU80,KU80-LIKE PROTEIN,T2J15.4 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » KU80 cDNA ORF clone
Gene Symbol | KU80 |
Entrez Gene ID | 841223 |
Full Name | Ku80 family protein |
Synonyms | ARABIDOPSIS THALIANA KU80 HOMOLOG,ATKU80,KU80-LIKE PROTEIN,T2J15.4 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_001333292.1 | NP_001322094.1 | Ku80 family protein |
NM_103701.2 | NP_564520.1 | Ku80 family protein |
NM_001333293.1 | NP_001322093.1 | Ku80 family protein |
XRCC5 | XP_001084586.2 | |
Bos taurus (cattle) | LOC531945 | NP_001095611.1 |
Danio rerio (zebrafish) | LOC100331090 | XP_002665537.3 |
Neurospora crassa | NCU00077 | XP_956387.2 |
Canis lupus familiaris (dog) | XRCC5 | XP_536061.4 |
Rattus norvegicus (Norway rat) | Xrcc5 | NP_803154.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP009910 | XP_319031.4 |
Mus musculus (house mouse) | Xrcc5 | NP_033559.2 |
Gallus gallus (chicken) | XRCC5 | XP_422072.4 |
Schizosaccharomyces pombe (fission yeast) | pku80 | NP_596791.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_10157 | XP_003713796.1 |
Homo sapiens (human) | XRCC5 | NP_066964.1 |
Pan troglodytes (chimpanzee) | XRCC5 | XP_001151873.2 |
Danio rerio (zebrafish) | xrcc5 | NP_001017360.1 |
Arabidopsis thaliana (thale cress) | KU80 | NP_564520.1 |
Xenopus tropicalis (tropical clawed frog) | xrcc5 | XP_002942054.2 |
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, Cheuk RF, Chin CW, Chung MK, Conn L, Conway AB, Conway AR, Creasy TH, Dewar K, Dunn P, Etgu P, Feldblyum TV, Feng J, Fong B, Fujii CY, Gill JE, Goldsmith AD, Haas B, Hansen NF, Hughes B, Huizar L, Hunter JL, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim CJ, Koo HL, Kremenetskaia I, Kurtz DB, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee JM, Lenz CA, Li JH, Li Y, Lin X, Liu SX, Liu ZA, Luros JS, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman WC, Osborne BI, Pai G, Peterson J, Pham PK, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg SL, Schwartz JR, Shinn P, Southwick AM, Sun H, Tallon LJ, Tambunga G, Toriumi MJ, Town CD, Utterback T, Van Aken S, Vaysberg M, Vysotskaia VS, Walker M, Wu D, Yu G, Fraser CM, Venter JC, Davis RW
Nature408(6814)816-20(2000 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
We found that larger deletions of >20 bp predominated after DSB repair in ku80 and ku80 parp1 parp2 mutants, corroborating with a role of KU in preventing DSB end resection. Deletion lengths did not significantly differ between ku80 and ku80 parp1 parp2 mutants, suggesting that a KU- and PARP-independent b-NHEJ mechanism becomes active in these mutants.
Title: CRISPR/Cas9-Induced Double-Strand Break Repair in Arabidopsis Nonhomologous End-Joining Mutants.
The speed of a systemic infection of geminivirus in Arabidopsis thaliana is KU80-dependent.
Title: KU80, a key factor for non-homologous end-joining, retards geminivirus multiplication.
The genome stability of the Arabidopsis thaliana mutants deficient in ATM (communication between DNA strand break recognition and the repair machinery), KU80 (deficient in NHEJ) and RAD51B (deficient in HR repair) genes, was investigated.
Title: Genome stability of Arabidopsis atm, ku80 and rad51b mutants: somatic and transgenerational responses to stress.
role during the first minutes post-irradiation
Title: Xrcc1-dependent and Ku-dependent DNA double-strand break repair kinetics in Arabidopsis plants.
Ku70 and Ku80 expression in 3-week-old young seedlings were down-regulated by heat stress in a time-dependent manner, as examined using real-time quantitative PCR, GUS reporter systems, and western blotting analysis.
Title: Regulation of Arabidopsis thaliana Ku genes at different developmental stages under heat stress.
The following KU80 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the KU80 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb25797 | |
Clone ID Related Accession (Same CDS sequence) | NM_103701.2 | |
Accession Version | NM_103701.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2043bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Ku80 family protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_103701.1. |
1 | ATGGCACGAA ATCGGGAGGG TTTGGTTTTG GTGCTCGATG TAGGTCCTGC GATGCGTAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_564520.1 |
CDS | 117..2159 |
Translation |
Target ORF information:
Target ORF information:
|
NM_103701.2 |
1 | ATGGCACGAA ATCGGGAGGG TTTGGTTTTG GTGCTCGATG TAGGTCCTGC GATGCGTAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb34243 | |
Clone ID Related Accession (Same CDS sequence) | NM_001333292.1 | |
Accession Version | NM_001333292.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1992bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Ku80 family protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). |
1 | ATGGCACGAA ATCGGGAGGG TTTGGTTTTG GTGCTCGATG TAGGTCCTGC GATGCGTAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001322094.1 |
CDS | 69..2060 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001333292.1 |
1 | ATGGCACGAA ATCGGGAGGG TTTGGTTTTG GTGCTCGATG TAGGTCCTGC GATGCGTAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb34244 | |
Clone ID Related Accession (Same CDS sequence) | NM_001333293.1 | |
Accession Version | NM_001333293.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1908bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Ku80 family protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). |
1 | ATGTTCAATG CTACTTCAGA AGAAGAAACT GGAAACGAGC TTGCTAGGGA GATAGGTGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001322093.1 |
CDS | 132..2039 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001333293.1 |
1 | ATGTTCAATG CTACTTCAGA AGAAGAAACT GGAAACGAGC TTGCTAGGGA GATAGGTGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. |