Gene Symbol | AT1G28060 |
Entrez Gene ID | 839699 |
Full Name | Pre-mRNA-splicing factor 3 |
Synonyms | F13K9.16,F13K9_16,RDM16,RNA-directed DNA methylation 16 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » AT1G28060 cDNA ORF clone
Gene Symbol | AT1G28060 |
Entrez Gene ID | 839699 |
Full Name | Pre-mRNA-splicing factor 3 |
Synonyms | F13K9.16,F13K9_16,RDM16,RNA-directed DNA methylation 16 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_001332796.1 | NP_001319094.1 | Pre-mRNA-splicing factor 3 |
NM_102571.3 | NP_174127.1 | Pre-mRNA-splicing factor 3 |
NM_001332797.1 | NP_001321377.1 | Pre-mRNA-splicing factor 3 |
Pan troglodytes (chimpanzee) | PRPF3 | NP_001233355.1 |
Caenorhabditis elegans (roundworm) | prp-3 | NP_499300.1 |
Oryza sativa (rice) | Os09g0249600 | NP_001062673.1 |
Homo sapiens (human) | PRPF3 | NP_004689.1 |
PRPF3 | XP_001101105.1 | |
Mus musculus (house mouse) | Prpf3 | NP_081817.2 |
Canis lupus familiaris (dog) | PRPF3 | XP_003639679.1 |
Bos taurus (cattle) | PRPF3 | NP_001039516.1 |
Gallus gallus (chicken) | PRPF3 | NP_001026561.1 |
Danio rerio (zebrafish) | prpf3 | NP_991311.1 |
Neurospora crassa | NCU01637 | XP_956005.1 |
Xenopus tropicalis (tropical clawed frog) | prpf3 | NP_001107672.1 |
Drosophila melanogaster (fruit fly) | Prp3 | NP_649156.1 |
Schizosaccharomyces pombe (fission yeast) | prp3 | NP_594560.1 |
Rattus norvegicus (Norway rat) | Prpf3 | NP_001102029.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP004682 | XP_307259.4 |
Magnaporthe oryzae (rice blast fungus) | MGG_01157 | XP_003717764.1 |
Arabidopsis thaliana (thale cress) | AT1G28060 | NP_174127.1 |
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, Cheuk RF, Chin CW, Chung MK, Conn L, Conway AB, Conway AR, Creasy TH, Dewar K, Dunn P, Etgu P, Feldblyum TV, Feng J, Fong B, Fujii CY, Gill JE, Goldsmith AD, Haas B, Hansen NF, Hughes B, Huizar L, Hunter JL, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim CJ, Koo HL, Kremenetskaia I, Kurtz DB, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee JM, Lenz CA, Li JH, Li Y, Lin X, Liu SX, Liu ZA, Luros JS, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman WC, Osborne BI, Pai G, Peterson J, Pham PK, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg SL, Schwartz JR, Shinn P, Southwick AM, Sun H, Tallon LJ, Tambunga G, Toriumi MJ, Town CD, Utterback T, Van Aken S, Vaysberg M, Vysotskaia VS, Walker M, Wu D, Yu G, Fraser CM, Venter JC, Davis RW
Nature408(6814)816-20(2000 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The results suggest, splicing factor RDM16 and STA1 play an important role in RNA directed DNA Methylation pathway by affecting expression of key component genes including MORC6 by accumulation of exon 4, which facilitates key ATPase binding sites and MG2 + binding sites for DNA methylation.
Title: RDM16 and STA1 regulate differential usage of exon/intron in RNA directed DNA methylation pathway.
The following AT1G28060 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the AT1G28060 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb25009 | |
Clone ID Related Accession (Same CDS sequence) | NM_001332796.1 , NM_102571.3 , NM_001332797.1 | |
Accession Version | NM_001332796.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2361bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Pre-mRNA-splicing factor 3 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). |
1 | ATGGATAAGG AGAGATATTC CAGGAGCCAC CGTGACGATC GTGATCGAGA TTCGAGTCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001319094.1 |
CDS | 185..2545 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001332796.1 |
1 | ATGGATAAGG AGAGATATTC CAGGAGCCAC CGTGACGATC GTGATCGAGA TTCGAGTCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb25009 | |
Clone ID Related Accession (Same CDS sequence) | NM_001332796.1 , NM_102571.3 , NM_001332797.1 | |
Accession Version | NM_102571.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2361bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Pre-mRNA-splicing factor 3 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_102571.2. |
1 | ATGGATAAGG AGAGATATTC CAGGAGCCAC CGTGACGATC GTGATCGAGA TTCGAGTCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_174127.1 |
CDS | 165..2525 |
Translation |
Target ORF information:
Target ORF information:
|
NM_102571.3 |
1 | ATGGATAAGG AGAGATATTC CAGGAGCCAC CGTGACGATC GTGATCGAGA TTCGAGTCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb25009 | |
Clone ID Related Accession (Same CDS sequence) | NM_001332796.1 , NM_102571.3 , NM_001332797.1 | |
Accession Version | NM_001332797.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2361bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | Pre-mRNA-splicing factor 3 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). |
1 | ATGGATAAGG AGAGATATTC CAGGAGCCAC CGTGACGATC GTGATCGAGA TTCGAGTCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001321377.1 |
CDS | 149..2509 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001332797.1 |
1 | ATGGATAAGG AGAGATATTC CAGGAGCCAC CGTGACGATC GTGATCGAGA TTCGAGTCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. |