AT4G39952 cDNA ORF clone, Arabidopsis thaliana(thale cress)

Gene
Clones
gRNAs

Summary

Gene Symbol	AT4G39952
Entrez Gene ID	830155
Full Name	Pentatricopeptide repeat (PPR) superfamily protein
Gene Type	protein-coding
Organism	Arabidopsis thaliana(thale cress)

mRNA and Protein(s)

mRNA	Protein	Name
NM_148411.3	NP_680777.2	Pentatricopeptide repeat (PPR) superfamily protein

Pathways from BioSystems

Homologies

Arabidopsis thaliana (thale cress)	AT4G39952	NP_680777.2
Oryza sativa (rice)	Os04g0463800	NP_001053014.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.
Mayer K, Sch?ller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D?sterh?ft A, Stiekema W, Entian KD, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M?ller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham SA, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang YJ, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K?tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream MA, Lyne M, Benes V, Rechmann S, Borkova D, Bl?cker H, Scharfe M, Grimm M, L?hnert TH, Dose S, de Haan M, Maarse A, Sch?fer M, M?ller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M?ndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes HW, Stocker S, Zaccaria P, Bevan M, Wilson RK, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby IK, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie WR
Nature402(6763)769-77(1999 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following AT4G39952 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the AT4G39952 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OAb17576	NM_148411.3 Latest version!	Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein (AT4G39952), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$426.30 $609.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

AT4G39952 ( NM_148411.3 ) cDNA ORF clone, Arabidopsis thaliana(thale cress) -> NP_680777.2 Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein (AT4G39952), mRNA.

Price & Availability↑

CloneID	OAb17576
Clone ID Related Accession (Same CDS sequence)	NM_148411.3
Accession Version	NM_148411.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2328bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-02-13
Organism	Arabidopsis thaliana(thale cress)
Product	Pentatricopeptide repeat (PPR) superfamily protein
Comment	Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On Sep 12, 2016 this sequence version replaced NM_148411.2.

ATGTTGCGTC GTCTCTTGAA ACCCAATCTT GTTGTTACTC TACGCAAACT CTCTTCTTCT 
TCCGCAAGCT ACGTCGATCG TCATATTAGT GTGATTCTCT GCGATCAGAG CTTGAGCTTA 
GAGTCTCTGC GCAAACACAA CGCTCTTATC ATCACCGGAG GACTCTCGGA AAACATCTTC 
GTCGCATCGA AGCTAATTTC ATCTTACGCT TCTTACGGGA AACCCAATTT GTCTTCCAGA 
GTCTTCCATT TGGTTACTCG AAGAGATATC TTTCTTTGGA ATTCTATTAT CAAAGCACAT 
TTCTCCAATG GGGATTATGC TCGATCCTTG TGTTTCTTCT TCTCAATGCT CTTGTCTGGC 
CAATCCCCTG ATCATTTCAC TGCTCCCATG GTTGTTTCTG CTTGTGCGGA GCTTTTGTGG 
TTTCATGTTG GGACTTTCGT TCACGGGCTT GTTTTGAAAC ATGGAGGTTT TGATAGAAAC 
ACTGCTGTGG GAGCTTCCTT TGTGTATTTC TACTCAAAGT GTGGGTTTTT ACAAGATGCG 
TGTCTTGTGT TCGACGAAAT GCCTGACAGA GATGTTGTTG CTTGGACTGC CATTATATCT 
GGGCATGTGC AGAACGGCGA GAGCGAGGGA GGTTTGGGTT ATCTTTGCAA GATGCATAGT 
GCTGGTTCTG ATGTTGATAA GCCGAATCCC AGAACATTGG AATGCGGATT CCAAGCTTGT 
TCTAATCTGG GAGCTTTGAA AGAAGGAAGA TGTCTTCATG GATTTGCGGT GAAAAATGGT 
TTAGCTTCTT CCAAGTTTGT CCAGTCTTCC ATGTTTTCAT TCTATTCGAA ATCTGGGAAT 
CCATCCGAGG CTTATCTTTC TTTCCGTGAA CTTGGGGATG AAGATATGTT TTCATGGACT 
TCGATTATAG CGTCACTGGC GAGATCAGGT GACATGGAGG AAAGTTTTGA TATGTTCTGG 
GAAATGCAGA ACAAGGGAAT GCACCCAGAT GGGGTTGTCA TTAGCTGTTT GATTAATGAA 
CTAGGTAAGA TGATGCTTGT CCCTCAGGGT AAAGCCTTTC ACGGGTTCGT CATAAGACAT 
TGTTTCTCTT TAGACAGTAC AGTTTGCAAT TCCTTGTTAT CGATGTACTG CAAATTCGAG 
CTTCTGTCTG TGGCTGAGAA GCTTTTCTGT AGGATAAGCG AAGAAGGAAA CAAAGAAGCT 
TGGAATACAA TGCTTAAAGG CTATGGTAAA ATGAAATGTC ACGTAAAGTG TATCGAGTTA 
TTTAGAAAAA TTCAGAATCT TGGAATTGAA ATCGACTCTG CCAGCGCAAC CTCTGTCATA 
TCTTCTTGTT CCCACATAGG AGCGGTGCTA CTAGGGAAGT CGTTGCATTG CTATGTTGTC 
AAAACTAGCC TGGATCTTAC CATCTCAGTG GTCAATTCCC TCATTGATTT GTATGGAAAA 
ATGGGAGACT TGACTGTAGC TTGGAGGATG TTTTGTGAAG CAGATACTAA CGTTATCACT 
TGGAACGCAA TGATTGCGTC TTATGTTCAC TGTGAGCAAT CCGAAAAAGC CATTGCATTG 
TTCGATAGAA TGGTTTCTGA GAATTTCAAA CCCAGCTCAA TAACTTTGGT GACTCTGCTT 
ATGGCTTGTG TCAATACTGG CTCTCTGGAG AGAGGACAGA TGATTCATCG GTACATCACT 
GAAACAGAGC ACGAGATGAA TCTTTCTCTT TCAGCTGCTC TCATTGACAT GTACGCGAAA 
TGTGGCCACC TTGAAAAGTC ACGAGAACTG TTTGATGCTG GAAATCAGAA GGATGCCGTT 
TGTTGGAATG TGATGATATC AGGTTATGGA ATGCACGGAG ATGTTGAATC GGCCATAGCA 
CTTTTTGATC AAATGGAAGA GTCTGATGTT AAACCAACCG GACCTACATT TCTTGCGCTT 
CTATCGGCTT GCACGCACGC TGGTTTAGTA GAACAAGGGA AAAAACTATT TCTCAAGATG 
CATCAGTACG ATGTGAAACC CAACTTAAAG CATTACTCTT GTCTTGTGGA TCTTCTTTCC 
AGGTCTGGTA ATTTGGAGGA AGCTGAAAGC ACAGTCATGT CTATGCCATT CTCACCAGAC 
GGGGTCATAT GGGGAACATT GTTGAGCTCA TGCATGACCC ATGGGGAGTT TGAGATGGGA 
ATTCGAATGG CAGAACGTGC GGTTGCTAGT GATCCGCAGA ACGATGGGTA TTATATAATG 
CTTGCGAACA TGTACAGTGC TGCAGGTAAG TGGGAAGAAG CGGAAAGGGC ACGAGAGATG 
ATGAGGGAAA GCGGAGTTGG TAAGAGAGCT GGTCATAGTG TAGTCTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_680777.2
CDS	44..2371
Translation	MLRRLLKPNLVVTLRKLSSSSASYVDRHISVILCDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYYIMLANMYSAAGKWEEAERAREMMRESGVGKRAGHSVV

Target ORF information:

RefSeq Version	NM_148411.3
Organism	Arabidopsis thaliana(thale cress)
Definition	Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein (AT4G39952), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_148411.3

ORF Insert Sequence:

ATGTTGCGTC GTCTCTTGAA ACCCAATCTT GTTGTTACTC TACGCAAACT CTCTTCTTCT 
TCCGCAAGCT ACGTCGATCG TCATATTAGT GTGATTCTCT GCGATCAGAG CTTGAGCTTA 
GAGTCTCTGC GCAAACACAA CGCTCTTATC ATCACCGGAG GACTCTCGGA AAACATCTTC 
GTCGCATCGA AGCTAATTTC ATCTTACGCT TCTTACGGGA AACCCAATTT GTCTTCCAGA 
GTCTTCCATT TGGTTACTCG AAGAGATATC TTTCTTTGGA ATTCTATTAT CAAAGCACAT 
TTCTCCAATG GGGATTATGC TCGATCCTTG TGTTTCTTCT TCTCAATGCT CTTGTCTGGC 
CAATCCCCTG ATCATTTCAC TGCTCCCATG GTTGTTTCTG CTTGTGCGGA GCTTTTGTGG 
TTTCATGTTG GGACTTTCGT TCACGGGCTT GTTTTGAAAC ATGGAGGTTT TGATAGAAAC 
ACTGCTGTGG GAGCTTCCTT TGTGTATTTC TACTCAAAGT GTGGGTTTTT ACAAGATGCG 
TGTCTTGTGT TCGACGAAAT GCCTGACAGA GATGTTGTTG CTTGGACTGC CATTATATCT 
GGGCATGTGC AGAACGGCGA GAGCGAGGGA GGTTTGGGTT ATCTTTGCAA GATGCATAGT 
GCTGGTTCTG ATGTTGATAA GCCGAATCCC AGAACATTGG AATGCGGATT CCAAGCTTGT 
TCTAATCTGG GAGCTTTGAA AGAAGGAAGA TGTCTTCATG GATTTGCGGT GAAAAATGGT 
TTAGCTTCTT CCAAGTTTGT CCAGTCTTCC ATGTTTTCAT TCTATTCGAA ATCTGGGAAT 
CCATCCGAGG CTTATCTTTC TTTCCGTGAA CTTGGGGATG AAGATATGTT TTCATGGACT 
TCGATTATAG CGTCACTGGC GAGATCAGGT GACATGGAGG AAAGTTTTGA TATGTTCTGG 
GAAATGCAGA ACAAGGGAAT GCACCCAGAT GGGGTTGTCA TTAGCTGTTT GATTAATGAA 
CTAGGTAAGA TGATGCTTGT CCCTCAGGGT AAAGCCTTTC ACGGGTTCGT CATAAGACAT 
TGTTTCTCTT TAGACAGTAC AGTTTGCAAT TCCTTGTTAT CGATGTACTG CAAATTCGAG 
CTTCTGTCTG TGGCTGAGAA GCTTTTCTGT AGGATAAGCG AAGAAGGAAA CAAAGAAGCT 
TGGAATACAA TGCTTAAAGG CTATGGTAAA ATGAAATGTC ACGTAAAGTG TATCGAGTTA 
TTTAGAAAAA TTCAGAATCT TGGAATTGAA ATCGACTCTG CCAGCGCAAC CTCTGTCATA 
TCTTCTTGTT CCCACATAGG AGCGGTGCTA CTAGGGAAGT CGTTGCATTG CTATGTTGTC 
AAAACTAGCC TGGATCTTAC CATCTCAGTG GTCAATTCCC TCATTGATTT GTATGGAAAA 
ATGGGAGACT TGACTGTAGC TTGGAGGATG TTTTGTGAAG CAGATACTAA CGTTATCACT 
TGGAACGCAA TGATTGCGTC TTATGTTCAC TGTGAGCAAT CCGAAAAAGC CATTGCATTG 
TTCGATAGAA TGGTTTCTGA GAATTTCAAA CCCAGCTCAA TAACTTTGGT GACTCTGCTT 
ATGGCTTGTG TCAATACTGG CTCTCTGGAG AGAGGACAGA TGATTCATCG GTACATCACT 
GAAACAGAGC ACGAGATGAA TCTTTCTCTT TCAGCTGCTC TCATTGACAT GTACGCGAAA 
TGTGGCCACC TTGAAAAGTC ACGAGAACTG TTTGATGCTG GAAATCAGAA GGATGCCGTT 
TGTTGGAATG TGATGATATC AGGTTATGGA ATGCACGGAG ATGTTGAATC GGCCATAGCA 
CTTTTTGATC AAATGGAAGA GTCTGATGTT AAACCAACCG GACCTACATT TCTTGCGCTT 
CTATCGGCTT GCACGCACGC TGGTTTAGTA GAACAAGGGA AAAAACTATT TCTCAAGATG 
CATCAGTACG ATGTGAAACC CAACTTAAAG CATTACTCTT GTCTTGTGGA TCTTCTTTCC 
AGGTCTGGTA ATTTGGAGGA AGCTGAAAGC ACAGTCATGT CTATGCCATT CTCACCAGAC 
GGGGTCATAT GGGGAACATT GTTGAGCTCA TGCATGACCC ATGGGGAGTT TGAGATGGGA 
ATTCGAATGG CAGAACGTGC GGTTGCTAGT GATCCGCAGA ACGATGGGTA TTATATAATG 
CTTGCGAACA TGTACAGTGC TGCAGGTAAG TGGGAAGAAG CGGAAAGGGC ACGAGAGATG 
ATGAGGGAAA GCGGAGTTGG TAAGAGAGCT GGTCATAGTG TAGTCTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.
Nature402(6763)769-77(1999 Dec)
Mayer K,Sch?ller C,Wambutt R,Murphy G,Volckaert G,Pohl T,D?sterh?ft A,Stiekema W,Entian KD,Terryn N,Harris B,Ansorge W,Brandt P,Grivell L,Rieger M,Weichselgartner M,de Simone V,Obermaier B,Mache R,M?ller M,Kreis M,Delseny M,Puigdomenech P,Watson M,Schmidtheini T,Reichert B,Portatelle D,Perez-Alonso M,Boutry M,Bancroft I,Vos P,Hoheisel J,Zimmermann W,Wedler H,Ridley P,Langham SA,McCullagh B,Bilham L,Robben J,Van der Schueren J,Grymonprez B,Chuang YJ,Vandenbussche F,Braeken M,Weltjens I,Voet M,Bastiaens I,Aert R,Defoor E,Weitzenegger T,Bothe G,Ramsperger U,Hilbert H,Braun M,Holzer E,Brandt A,Peters S,van Staveren M,Dirske W,Mooijman P,Klein Lankhorst R,Rose M,Hauf J,K?tter P,Berneiser S,Hempel S,Feldpausch M,Lamberth S,Van den Daele H,De Keyser A,Buysshaert C,Gielen J,Villarroel R,De Clercq R,Van Montagu M,Rogers J,Cronin A,Quail M,Bray-Allen S,Clark L,Doggett J,Hall S,Kay M,Lennard N,McLay K,Mayes R,Pettett A,Rajandream MA,Lyne M,Benes V,Rechmann S,Borkova D,Bl?cker H,Scharfe M,Grimm M,L?hnert TH,Dose S,de Haan M,Maarse A,Sch?fer M,M?ller-Auer S,Gabel C,Fuchs M,Fartmann B,Granderath K,Dauner D,Herzl A,Neumann S,Argiriou A,Vitale D,Liguori R,Piravandi E,Massenet O,Quigley F,Clabauld G,M?ndlein A,Felber R,Schnabl S,Hiller R,Schmidt W,Lecharny A,Aubourg S,Chefdor F,Cooke R,Berger C,Montfort A,Casacuberta E,Gibbons T,Weber N,Vandenbol M,Bargues M,Terol J,Torres A,Perez-Perez A,Purnelle B,Bent E,Johnson S,Tacon D,Jesse T,Heijnen L,Schwarz S,Scholler P,Heber S,Francs P,Bielke C,Frishman D,Haase D,Lemcke K,Mewes HW,Stocker S,Zaccaria P,Bevan M,Wilson RK,de la Bastide M,Habermann K,Parnell L,Dedhia N,Gnoj L,Schutz K,Huang E,Spiegel L,Sehkon M,Murray J,Sheet P,Cordes M,Abu-Threideh J,Stoneking T,Kalicki J,Graves T,Harmon G,Edwards J,Latreille P,Courtney L,Cloud J,Abbott A,Scott K,Johnson D,Minx P,Bentley D,Fulton B,Miller N,Greco T,Kemp K,Kramer J,Fulton L,Mardis E,Dante M,Pepin K,Hillier L,Nelson J,Spieth J,Ryan E,Andrews S,Geisel C,Layman D,Du H,Ali J,Berghoff A,Jones K,Drone K,Cotton M,Joshu C,Antonoiu B,Zidanic M,Strong C,Sun H,Lamar B,Yordan C,Ma P,Zhong J,Preston R,Vil D,Shekher M,Matero A,Shah R,Swaby IK,O'Shaughnessy A,Rodriguez M,Hoffmann J,Till S,Granat S,Shohdy N,Hasegawa A,Hameed A,Lodhi M,Johnson A,Chen E,Marra M,Martienssen R,McCombie WR

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AT4G39952 cDNA ORF clone, Arabidopsis thaliana(thale cress)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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