Gene Symbol | EMB2770 |
Entrez Gene ID | 827925 |
Full Name | pre-mRNA splicing factor-like protein |
Synonyms | EMBRYO DEFECTIVE 2770,F9H3.5,F9H3_5,STA1,STABILIZED 1 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » EMB2770 cDNA ORF clone
Gene Symbol | EMB2770 |
Entrez Gene ID | 827925 |
Full Name | pre-mRNA splicing factor-like protein |
Synonyms | EMBRYO DEFECTIVE 2770,F9H3.5,F9H3_5,STA1,STABILIZED 1 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_116581.2 | NP_192252.1 | pre-mRNA splicing factor-like protein |
NM_001340449.1 | NP_001329764.1 | pre-mRNA splicing factor-like protein |
NM_001340448.1 | NP_001319859.1 | pre-mRNA splicing factor-like protein |
Homo sapiens (human) | PRPF6 | NP_036601.2 |
Rattus norvegicus (Norway rat) | Prpf6 | NP_001073234.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP005640 | XP_315659.1 |
Oryza sativa (rice) | Os10g0498600 | NP_001064969.1 |
Xenopus tropicalis (tropical clawed frog) | prpf6 | NP_001025642.1 |
Canis lupus familiaris (dog) | PRPF6 | XP_534481.3 |
Mus musculus (house mouse) | Prpf6 | NP_598462.1 |
Gallus gallus (chicken) | PRPF6 | XP_417426.2 |
Magnaporthe oryzae (rice blast fungus) | MGG_07213 | XP_003715426.1 |
Arabidopsis thaliana (thale cress) | EMB2770 | NP_192252.1 |
Pan troglodytes (chimpanzee) | PRPF6 | XP_001152053.3 |
Bos taurus (cattle) | PRPF6 | NP_001039840.1 |
Danio rerio (zebrafish) | prpf6 | NP_997820.1 |
Schizosaccharomyces pombe (fission yeast) | prp1 | NP_596086.1 |
Caenorhabditis elegans (roundworm) | prp-6 | NP_507525.1 |
Drosophila melanogaster (fruit fly) | CG6841 | NP_649073.1 |
Neurospora crassa | NCU04606 | XP_958849.1 |
Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.
Mayer K, Sch?ller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D?sterh?ft A, Stiekema W, Entian KD, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M?ller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham SA, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang YJ, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K?tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream MA, Lyne M, Benes V, Rechmann S, Borkova D, Bl?cker H, Scharfe M, Grimm M, L?hnert TH, Dose S, de Haan M, Maarse A, Sch?fer M, M?ller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M?ndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes HW, Stocker S, Zaccaria P, Bevan M, Wilson RK, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby IK, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie WR
Nature402(6763)769-77(1999 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The results suggest, splicing factor RDM16 and STA1 play an important role in RNA directed DNA Methylation pathway by affecting expression of key component genes including MORC6 by accumulation of exon 4, which facilitates key ATPase binding sites and MG2 + binding sites for DNA methylation.
Title: RDM16 and STA1 regulate differential usage of exon/intron in RNA directed DNA methylation pathway.
Findings indicate that heat-inducible STABILIZED1 (STA1) activity for pre-mRNA splicing serves as a molecular regulatory mechanism underlying the plant stress tolerance to high-temperature stress.
Title: STABILIZED1 Modulates Pre-mRNA Splicing for Thermotolerance.
The authors propose that STA1 acts downstream of siRNA biogenesis and facilitates the production of Pol V-dependent RNA transcripts in the RNA-directed DNA methylation pathway.
Title: The PRP6-like splicing factor STA1 is involved in RNA-directed DNA methylation by facilitating the production of Pol V-dependent scaffold RNAs.
The results suggest that STA1 is involved in miRNA biogenesis directly by functioning in pri-miRNA splicing and indirectly by modulating the DCL1 transcript level.
Title: STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis.
The following EMB2770 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the EMB2770 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb15592 | |
Clone ID Related Accession (Same CDS sequence) | NM_116581.2 , NM_001340449.1 , NM_001340448.1 | |
Accession Version | NM_116581.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3090bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | pre-mRNA splicing factor-like protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On Sep 12, 2016 this sequence version replaced NM_116581.1. |
1 | ATGGTGTTTC TCTCGATTCC AAACGGGAAG ACTTTATCGA TCGACGTGAA CCCTAATTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_192252.1 |
CDS | 64..3153 |
Translation |
Target ORF information:
Target ORF information:
|
NM_116581.2 |
1 | ATGGTGTTTC TCTCGATTCC AAACGGGAAG ACTTTATCGA TCGACGTGAA CCCTAATTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb15592 | |
Clone ID Related Accession (Same CDS sequence) | NM_116581.2 , NM_001340449.1 , NM_001340448.1 | |
Accession Version | NM_001340449.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3090bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | pre-mRNA splicing factor-like protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). |
1 | ATGGTGTTTC TCTCGATTCC AAACGGGAAG ACTTTATCGA TCGACGTGAA CCCTAATTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001329764.1 |
CDS | 64..3153 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001340449.1 |
1 | ATGGTGTTTC TCTCGATTCC AAACGGGAAG ACTTTATCGA TCGACGTGAA CCCTAATTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb15592 | |
Clone ID Related Accession (Same CDS sequence) | NM_116581.2 , NM_001340449.1 , NM_001340448.1 | |
Accession Version | NM_001340448.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3090bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | pre-mRNA splicing factor-like protein | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). |
1 | ATGGTGTTTC TCTCGATTCC AAACGGGAAG ACTTTATCGA TCGACGTGAA CCCTAATTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001319859.1 |
CDS | 64..3153 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001340448.1 |
1 | ATGGTGTTTC TCTCGATTCC AAACGGGAAG ACTTTATCGA TCGACGTGAA CCCTAATTCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. |