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Xenopus tropicalis (tropical clawed frog)

Browse by Letter Index, Genomic Locus


Pyruvate metabolism and Citric Acid (TCA) cycle Interconversion of 2-oxoglutarate and 2-hydroxyglutarate
Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. Respiratory electron transport
Formation of ATP by chemiosmotic coupling The fatty acid cycling model
Synthesis and interconversion of nucleotide di- and triphosphates Vitamins B6 activation to pyridoxal phosphate
Lysine catabolism Creatine metabolism
Metabolism of ingested SeMet, Sec, MeSec into H2Se Biological oxidations
Cytochrome P450 - arranged by substrate type PAOs oxidise polyamines to amines
Formation of the active cofactor, UDP-glucuronate Glutathione synthesis and recycling
Aflatoxin activation and detoxification Erythrocytes take up oxygen and release carbon dioxide
Abacavir transport and metabolism Axon guidance
Sema4D in semaphorin signaling Sema4D induced cell migration and growth-cone collapse
Netrin-1 signaling Signaling by Robo receptor
Ephrin signaling Myogenesis
CDO in myogenesis Signaling by NODAL
Neutrophil degranulation Miscellaneous digestion events
MET activates PTK2 signaling Synthesis of PIPs in the nucleus
Collagen chain trimerization TBC/RABGAPs
HATs acetylate histones Cellular response to hypoxia
Regulation of Hypoxia-inducible Factor (HIF) by oxygen Attenuation phase
Oncogene Induced Senescence Oxidative Stress Induced Senescence
Gene Expression Notch-HLH transcription pathway
TP53 Regulates Transcription of Caspase Activators and Caspases TP53 Regulates Transcription of Genes Involved in G1 Cell Cycle Arrest
Regulation of TP53 Expression Regulation of TP53 Degradation
Regulation of TP53 Activity through Phosphorylation Regulation of TP53 Activity through Acetylation
RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening RNA Polymerase II Transcription Elongation
Formation of RNA Pol II elongation complex Transport of Mature mRNA derived from an Intron-Containing Transcript
Processing of Capped Intronless Pre-mRNA SLBP independent Processing of Histone Pre-mRNAs
Formation of the Editosome C6 deamination of adenosine
Nonsense-Mediated Decay (NMD) Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) Post-transcriptional silencing by small RNAs
HuR (ELAVL1) binds and stabilizes mRNA Translation
Eukaryotic Translation Initiation Cap-dependent Translation Initiation
Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S L13a-mediated translational silencing of Ceruloplasmin expression
snRNP Assembly TET1,2,3 and TDG demethylate DNA
Collagen formation Collagen biosynthesis and modifying enzymes
Laminin interactions ECM proteoglycans
Degradation of the extracellular matrix Activation of Matrix Metalloproteinases
Mitochondrial translation Cilium Assembly
Cargo trafficking to the periciliary membrane Metabolism of proteins
Association of TriC/CCT with target proteins during biosynthesis Synthesis of glycosylphosphatidylinositol (GPI)
N-glycan antennae elongation in the medial/trans-Golgi O-linked glycosylation
O-linked glycosylation of mucins Termination of O-glycan biosynthesis
SUMO is conjugated to E1 (UBA2:SAE1) SUMOylation of DNA damage response and repair proteins
Glycoprotein hormones Mitophagy
Ligand-dependent caspase activation BH3-only proteins associate with and inactivate anti-apoptotic BCL-2 members
Release of apoptotic factors from the mitochondria SMAC-mediated apoptotic response
Caspase-mediated cleavage of cytoskeletal proteins Breakdown of the nuclear lamina
Cell Cycle Checkpoints Transcriptional activation of p53 responsive genes
G2/M DNA damage checkpoint Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
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