Gene Symbol | LOC103909874 |
Entrez Gene ID | 103909874 |
Full Name | synaptotagmin-1-like |
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
ORF » Species Summary » Danio rerio » LOC103909874 cDNA ORF clone
Gene Symbol | LOC103909874 |
Entrez Gene ID | 103909874 |
Full Name | synaptotagmin-1-like |
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_021470716.1 | XP_021326391.1 | synaptotagmin-1-like isoform X2 |
NM_001365290.1 | NP_001352219.1 | synaptotagmin VIII isoform 2 |
XM_021470714.1 | XP_021326389.1 | synaptotagmin-1-like isoform X1 |
XM_021470717.1 | XP_021326392.1 | synaptotagmin-1-like isoform X3 |
XM_021470718.1 | XP_021326393.1 | synaptotagmin-1-like isoform X4 |
NM_001365289.1 | NP_001352218.1 | synaptotagmin VIII isoform 1 |
XM_009298121.2 | XP_009296396.1 | synaptotagmin-1-like |
Functional analysis reveals no transcriptional role for the glucocorticoid receptor ?-isoform in zebrafish.
Chatzopoulou A, Schoonheim PJ, Torraca V, Meijer AH, Spaink HP, Schaaf MJ
Molecular and cellular endocrinology44761-70(2017 May)
A manual collection of Syt, Esyt, Rph3a, Rph3al, Doc2, and Dblc2 genes from 46 metazoan genomes--an open access resource for neuroscience and evolutionary biology.
Craxton M
BMC genomics1137(2010 Jan)
Evolutionary genomics of plant genes encoding N-terminal-TM-C2 domain proteins and the similar FAM62 genes and synaptotagmin genes of metazoans.
Craxton M
BMC genomics8259(2007 Jul)
15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis.
Lo J, Lee S, Xu M, Liu F, Ruan H, Eun A, He Y, Ma W, Wang W, Wen Z, Peng J
Genome research13(3)455-66(2003 Mar)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC103909874 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC103909874 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa29596 | |
Clone ID Related Accession (Same CDS sequence) | XM_021470714.1 , NM_001365289.1 , XM_009298121.2 | |
Accession Version | NM_001365289.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1194bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-03-20 | |
Organism | Danio rerio(zebrafish) | |
Product | synaptotagmin VIII isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from FQ976913.8. On Aug 15, 2018 this sequence version replaced XM_021470714.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: GFIL01040312.1, GDQH01021796.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA3505392 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001352218.1 |
CDS | 183..1376 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001365289.1 |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa29596 | |
Clone ID Related Accession (Same CDS sequence) | XM_021470714.1 , NM_001365289.1 , XM_009298121.2 | |
Accession Version | XM_021470714.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1194bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | synaptotagmin-1-like isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021326389.1 |
CDS | 558..1751 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021470714.1 |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa29596 | |
Clone ID Related Accession (Same CDS sequence) | XM_021470714.1 , NM_001365289.1 , XM_009298121.2 | |
Accession Version | XM_009298121.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1194bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | synaptotagmin-1-like | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009298121.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009296396.1 |
CDS | 116..1309 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009298121.2 |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa141484 | |
Clone ID Related Accession (Same CDS sequence) | XM_021470716.1 , NM_001365290.1 | |
Accession Version | NM_001365290.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1098bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-03-20 | |
Organism | Danio rerio(zebrafish) | |
Product | synaptotagmin VIII isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from FQ976913.8. On Aug 15, 2018 this sequence version replaced XM_021470716.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA3505384, SAMEA3505392 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology ##RefSeq-Attributes-END## |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001352219.1 |
CDS | 183..1280 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001365290.1 |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa141484 | |
Clone ID Related Accession (Same CDS sequence) | XM_021470716.1 , NM_001365290.1 | |
Accession Version | XM_021470716.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1098bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | synaptotagmin-1-like isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021326391.1 |
CDS | 560..1657 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021470716.1 |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa141485 | |
Clone ID Related Accession (Same CDS sequence) | XM_021470717.1 | |
Accession Version | XM_021470717.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1095bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | synaptotagmin-1-like isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCAAGAT GGGCCATCTA TGCTATATTT GCTGCCATCG TCCTGCTCAT TCTTATCTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021326392.1 |
CDS | 211..1305 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021470717.1 |
1 | ATGCCAAGAT GGGCCATCTA TGCTATATTT GCTGCCATCG TCCTGCTCAT TCTTATCTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa141486 | |
Clone ID Related Accession (Same CDS sequence) | XM_021470718.1 | |
Accession Version | XM_021470718.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 819bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | synaptotagmin-1-like isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021326393.1 |
CDS | 562..1380 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021470718.1 |
1 | ATGACGCCCA GACCATCAGT AAAACCAACT AAAACCCCTC ACACCAACAC CACAACAGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Functional analysis reveals no transcriptional role for the glucocorticoid receptor ?-isoform in zebrafish. |
Evolutionary genomics of plant genes encoding N-terminal-TM-C2 domain proteins and the similar FAM62 genes and synaptotagmin genes of metazoans. |
15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. |